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NS1

Euk-Vir

Rat_bocavirus

NS1__YP_009227291__Rat_bocavirus__1788315

Identity

Accession:
YP_009227291 ↗
Protein ID:
NS1
Kingdom:
euk

Quality

85.1 mean pLDDT

Taxonomy

Shotokuvirae› Cossaviricota› Quintoviricetes› Piccovirales› Parvoviridae› Bocaparvovirus› Rat_bocavirus

TaxID: 1788315

Cluster

View cluster (44 members)

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 34-192_223-262
PDB
Domain cluster: rep: NS1__YP_009552695__Rhinolophus_pusillus_bocaparvovirus_1__2053079__D4-183
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF22419.3 best HBoV_NS1-like_N 51.6 1.20e-13 57.8% 31.6%
D2 medium residues 193-222_263-298
PDB
Domain cluster: representative
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ewiB00 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.56 41.0 3.21e-01 81.8% 93.7%
1ea0B03 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.53 45.0 2.85e-01 100.0% 69.1%
3mmzC00 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.52 41.0 3.23e-01 93.9% 94.4%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3378713 226.1.1.0 ↗ a+b two layers › POZ domain › POZ domain › POZ domain 0.55 38.0 2.97e-01 92.4% 31.6%
3603150 2004.1.1.220 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SWI2_SNF2 0.53 44.0 3.15e-01 98.5% 44.3%
2141082 109.3.1.164 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_3, Ank_4 0.51 36.0 2.70e-01 72.7% 41.8%
3276388 2002.1.1.0 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.51 41.0 2.58e-01 93.9% 88.8%
D3 medium residues 312-370
PDB
Domain cluster: rep: non-structural_protein_1__YP_009272913__Mink_bocavirus_1__2259808__D352-409
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01057.24 best Parvo_NS1 21.8 1.10e-04 100.0% 18.8%
D4 medium residues 436-507_538-556
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01057.24 best Parvo_NS1 99.4 2.50e-28 79.1% 25.1%
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1u0jA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.89 85.0 6.28e-01 100.0% 55.8%
1tueD00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.76 68.0 5.27e-01 100.0% 59.9%
1gg1A00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.56 47.0 3.34e-01 98.9% 82.6%
1j31A00 3.60.110.10 Alpha Beta › 4-Layer Sandwich › Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase › Carbon-nitrogen hydrolase 0.54 42.0 3.07e-01 84.6% 61.7%
1juvA00 3.40.430.10 Alpha Beta › 3-Layer(aba) Sandwich › Dihydrofolate Reductase, subunit A › Dihydrofolate Reductase, subunit A 0.52 46.0 3.61e-01 97.8% 96.4%
3zieD00 3.30.110.150 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › SepF-like protein 0.52 35.0 3.68e-01 75.8% 78.0%
1p5hA01 3.40.50.10540 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Crotonobetainyl-coa:carnitine coa-transferase; domain 1 0.51 44.0 3.05e-01 100.0% 80.9%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2704206 2004.1.1.57 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Parvo_NS1 0.84 77.0 5.38e-01 100.0% 43.8%
3474509 2004.1.1.57 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Parvo_NS1 0.82 59.0 4.66e-01 73.6% 47.6%
3479645 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.79 65.0 5.12e-01 87.9% 57.8%
3253892 2004.1.1.409 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF5906 0.77 70.0 5.43e-01 100.0% 61.5%
5003620 2004.1.1.409 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF5906 0.77 69.0 4.66e-01 100.0% 37.3%
5011495 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.77 66.0 5.06e-01 93.4% 56.0%
4542391 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.69 56.0 4.09e-01 89.0% 47.2%
3729591 109.2.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid 0.56 48.0 2.83e-01 98.9% 34.0%
3596413 7.1.1.5 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_2 0.53 36.0 3.71e-01 71.4% 94.4%
3999342 2002.3.1.0 ↗ a/b barrels › TIM beta/alpha-barrel › Glycoside hydrolase/deacetylase › Glycoside hydrolase/deacetylase 0.53 45.0 3.08e-01 98.9% 65.0%
3950023 2003.1.5.81 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.51 41.0 3.59e-01 89.0% 82.1%
3927557 246.2.1.4 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos,STPPase_N 0.51 43.0 3.13e-01 98.9% 63.7%
4470829 7502.1.1.0 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS 0.50 27.0 3.05e-01 86.8% 67.1%
D5 medium residues 595-644
PDB