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NS1
Euk-VirCalifornia_sea_lion_bocavirus_1
NS1__YP_009507350__California_sea_lion_bocavirus_1__1073959
Identity
- Accession:
- YP_009507350 ↗
- Protein ID:
- NS1
- Kingdom:
- euk
Quality
74.6
mean pLDDT
Taxonomy
Shotokuvirae›
Cossaviricota›
Quintoviricetes›
Piccovirales›
Parvoviridae›
Bocaparvovirus›
California_sea_lion_bocavirus_1
TaxID: 1073959
Cluster
View cluster (44 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 8-276
Domain cluster:
rep: NS1__YP_009507375__Chipmunk_parvovirus__56820__D1-203
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF22419.3 best | HBoV_NS1-like_N | 99.7 | 2.50e-28 | 88.5% | 98.8% |
CATH (20)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4kw3A00 | 3.40.1310.20 | Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › | 0.92 | 89.0 | 8.95e-01 | 100.0% | 99.6% |
| 6usmB01 | 3.40.1310.20 | Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › | 0.76 | 42.0 | 5.70e-01 | 87.0% | 100.0% |
| 4djbA00 | 3.30.70.2870 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Mastadenovirus E4 ORF3 | 0.73 | 33.0 | 4.96e-01 | 72.1% | 98.3% |
| 1m55A00 | 3.40.1310.20 | Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › | 0.72 | 51.0 | 6.00e-01 | 97.8% | 100.0% |
| 2x3gA00 | 3.30.70.1910 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.72 | 32.0 | 4.92e-01 | 86.2% | 99.1% |
| 1zpvA00 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.71 | 25.0 | 4.44e-01 | 72.9% | 100.0% |
| 2mq8A00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.69 | 28.0 | 4.28e-01 | 71.7% | 89.3% |
| 1f08B00 | 3.40.1310.10 | Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › | 0.68 | 31.0 | 4.18e-01 | 96.7% | 79.3% |
| 1r9wA00 | 3.40.1310.10 | Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › | 0.67 | 30.0 | 4.21e-01 | 96.3% | 83.3% |
| 1xmbA02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.64 | 26.0 | 4.25e-01 | 72.1% | 100.0% |
| 1j6wA00 | 3.30.1360.80 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › S-ribosylhomocysteinase (LuxS) | 0.61 | 32.0 | 4.05e-01 | 72.1% | 82.6% |
| 1pbuA00 | 3.30.70.1010 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Translation elongation factor EF1B, gamma chain, conserved domain | 0.58 | 32.0 | 4.03e-01 | 92.6% | 88.3% |
| 4cyuA00 | 3.30.70.560 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK | 0.55 | 32.0 | 4.16e-01 | 87.7% | 99.4% |
| 4kh9A01 | 2.60.40.3870 | Mainly Beta › Sandwich › Immunoglobulin-like › Uncharacterised protein PF16024, DUF4785 | 0.55 | 22.0 | 2.97e-01 | 71.0% | 66.7% |
| 2abyA00 | 3.30.70.1980 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Uncharacterised protein PF09406, DUF2004 | 0.52 | 23.0 | 3.22e-01 | 93.7% | 86.1% |
| 3gk6A00 | 3.20.80.10 | Alpha Beta › Alpha-Beta Barrel › Multidrug-efflux Transporter 1 Regulator Bmrr; Chain A › Regulatory factor, effector binding domain | 0.51 | 28.0 | 3.55e-01 | 93.7% | 88.9% |
| 3cx5B02 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.51 | 27.0 | 3.62e-01 | 71.4% | 97.0% |
| 3eoqB02 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.50 | 33.0 | 3.89e-01 | 99.6% | 95.1% |
| 1q2lA02 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.50 | 35.0 | 3.80e-01 | 70.3% | 83.5% |
| 2g47A02 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.50 | 35.0 | 3.79e-01 | 70.6% | 84.3% |
ECOD (20)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4959045 | 304.8.1.81 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › REP_ORF2-G2P | 0.72 | 37.0 | 4.91e-01 | 92.9% | 89.3% |
| 4880004 | 304.55.1.7 ↗ | a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › Rep_N | 0.71 | 52.0 | 5.86e-01 | 97.0% | 95.2% |
| 1491756 | 304.55.1.9 ↗ | a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › PV_NSP1 | 0.70 | 60.0 | 6.31e-01 | 100.0% | 97.2% |
| 3874532 | 304.47.1.1 ↗ | a+b two layers › Alpha-beta plaits › SEA domain › SEA domain › SEA | 0.68 | 31.0 | 4.73e-01 | 72.1% | 100.0% |
| 3213802 | 304.47.1.1 ↗ | a+b two layers › Alpha-beta plaits › SEA domain › SEA domain › SEA | 0.66 | 32.0 | 4.48e-01 | 72.1% | 93.1% |
| 5054179 | 304.42.1.1 ↗ | a+b two layers › Alpha-beta plaits › Molybdenum cofactor biosynthesis protein C, MoaC › Molybdenum cofactor biosynthesis protein C, MoaC › MoaC | 0.65 | 34.0 | 4.47e-01 | 72.9% | 91.0% |
| 4048260 | 304.42.1.1 ↗ | a+b two layers › Alpha-beta plaits › Molybdenum cofactor biosynthesis protein C, MoaC › Molybdenum cofactor biosynthesis protein C, MoaC › MoaC | 0.64 | 34.0 | 4.32e-01 | 72.9% | 85.2% |
| 4133039 | 304.8.1.81 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › REP_ORF2-G2P | 0.62 | 37.0 | 4.68e-01 | 92.6% | 95.8% |
| 4024988 | 304.48.1.4 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › Guanylate_cyc | 0.61 | 32.0 | 3.49e-01 | 87.4% | 59.5% |
| 4007464 | 304.55.1.19 ↗ | a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › Inovirus_Gp2 | 0.60 | 41.0 | 4.88e-01 | 92.9% | 98.9% |
| 3677440 | 862.1.1.11 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › AEP_C962R | 0.58 | 37.0 | 3.89e-01 | 97.0% | 68.2% |
| 3512046 | 862.1.1.0 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain | 0.57 | 37.0 | 3.84e-01 | 97.0% | 66.7% |
| 4315665 | 304.8.1.91 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › DUF1424 | 0.57 | 40.0 | 4.52e-01 | 96.7% | 91.4% |
| 4511949 | 304.48.1.74 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › Phage_GPA | 0.56 | 40.0 | 4.28e-01 | 93.7% | 81.2% |
| 3598810 | 862.1.1.0 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain | 0.56 | 35.0 | 4.14e-01 | 98.5% | 90.6% |
| 4673704 | 862.1.1.0 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain | 0.56 | 35.0 | 3.52e-01 | 97.0% | 58.2% |
| 3782802 | 304.15.1.0 ↗ | a+b two layers › Alpha-beta plaits › Viral DNA-binding domain › Viral DNA-binding domain | 0.55 | 24.0 | 2.85e-01 | 70.6% | 56.1% |
| 3492512 | 862.1.1.0 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain | 0.52 | 38.0 | 3.59e-01 | 97.0% | 62.8% |
| 3996738 | 309.1.1.6 ↗ | a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › LuxS/MPP-like metallohydrolase › Peptidase_M16_C,Peptidase_M16_M | 0.51 | 36.0 | 3.67e-01 | 70.6% | 75.0% |
| 4961990 | 604.39.1.0 ↗ | alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters | 0.50 | 30.0 | 3.84e-01 | 74.0% | 100.0% |
D2
medium
residues 316-371
Domain cluster:
rep: non-structural_protein_1__YP_009272913__Mink_bocavirus_1__2259808__D352-409
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01057.24 best | Parvo_NS1 | 25.1 | 1.20e-05 | 100.0% | 19.6% |