←Back to structures
NS1
Euk-VirEubenangee_virus
NS1__YP_009507698__Eubenangee_virus__40056
Identity
- Accession:
- YP_009507698 ↗
- Protein ID:
- NS1
- Kingdom:
- euk
Quality
80.0
mean pLDDT
Taxonomy
Orthornavirae›
Duplornaviricota›
Resentoviricetes›
Reovirales›
Sedoreoviridae›
Orbivirus›
Eubenangee_virus
TaxID: 40056
Cluster
View cluster (12 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1-92
Domain cluster:
rep: tubule_protein__YP_009158886__Wad_Medani_virus__40067__D1-96
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01718.24 best | Orbi_NS1 | 109.1 | 2.60e-31 | 100.0% | 17.4% |
D2
high
residues 139-264
Domain cluster:
rep: tubule_protein__YP_009163941__Fengkai_orbivirus__1692107__D132-252
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01718.24 best | Orbi_NS1 | 122.8 | 2.00e-35 | 100.0% | 24.4% |
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1pjqA02 | 3.30.160.110 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Sirohaem synthase, central domain | 0.58 | 20.0 | 3.38e-01 | 70.6% | 100.0% |
| 2frnA01 | 3.30.300.110 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › Met-10+ protein-like domains | 0.53 | 25.0 | 3.61e-01 | 77.0% | 100.0% |
| 4i1tA02 | 3.30.70.2640 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Arenavirus RNA polymerase | 0.53 | 30.0 | 3.56e-01 | 85.7% | 82.1% |
| 1ny8A00 | 3.30.300.90 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › BolA-like | 0.52 | 33.0 | 3.66e-01 | 87.3% | 82.5% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5079137 | 2008.1.1.16 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Mrr_cat | 0.55 | 38.0 | 3.72e-01 | 70.6% | 77.1% |
| 5053352 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.55 | 42.0 | 3.91e-01 | 81.0% | 78.1% |
| 4945329 | 2008.1.1.107 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NERD | 0.54 | 40.0 | 3.40e-01 | 77.8% | 52.1% |
| 4975459 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.51 | 38.0 | 3.58e-01 | 77.8% | 72.3% |
| 4940511 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.51 | 42.0 | 3.51e-01 | 91.3% | 88.3% |
D3
high
residues 347-520
Domain cluster:
rep: tubule_protein__YP_009163941__Fengkai_orbivirus__1692107__D97-131_392-554
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01718.24 best | Orbi_NS1 | 189.2 | 1.40e-55 | 100.0% | 32.8% |
D4
medium
residues 265-346
Domain cluster:
rep: Nsp1__YP_008719915__Mobuck_virus__1408137__D271-338
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01718.24 best | Orbi_NS1 | 73.1 | 2.30e-20 | 100.0% | 15.3% |
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2dkhA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.59 | 46.0 | 3.33e-01 | 86.6% | 87.9% |
| 6u5uG07 | 3.30.1120.100 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.52 | 40.0 | 3.49e-01 | 85.4% | 97.0% |
| 3q9cA00 | 3.40.800.20 | Alpha Beta › 3-Layer(aba) Sandwich › Arginase; Chain A › Histone deacetylase domain | 0.50 | 38.0 | 2.54e-01 | 81.7% | 92.7% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4408940 | 3265.1.1.1 ↗ | alpha arrays › C-terminal helical domain in tRNA modifying enzyme GidA › C-terminal helical domain in tRNA modifying enzyme GidA › C-terminal helical domain in tRNA modifying enzyme GidA › GIDA_C_1st | 0.52 | 31.0 | 3.22e-01 | 73.2% | 62.7% |
| 5018197 | 3487.1.1.1 ↗ | a+b three layers › Integron cassette protein VCH_CASS3 › Integron cassette protein VCH_CASS3 › Integron cassette protein VCH_CASS3 › M1E1E6-like | 0.52 | 37.0 | 3.38e-01 | 75.6% | 62.6% |
| 4267038 | 3457.1.1.1 ↗ | alpha bundles › GxGD membrane protease › GxGD membrane protease › GxGD membrane protease › Peptidase_A24 | 0.51 | 42.0 | 3.42e-01 | 100.0% | 95.7% |