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NS1

Euk-Vir

Myotis_myotis_bocavirus_1

NS1__YP_009508785__Myotis_myotis_bocavirus_1__1195367

Identity

Accession:
YP_009508785 ↗
Protein ID:
NS1
Kingdom:
euk

Quality

76.6 mean pLDDT

Taxonomy

Shotokuvirae› Cossaviricota› Quintoviricetes› Piccovirales› Parvoviridae› Bocaparvovirus› Myotis_myotis_bocavirus_1

TaxID: 1195367

Cluster

View cluster (44 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 19-292
PDB
Domain cluster: rep: NS1__YP_009507375__Chipmunk_parvovirus__56820__D1-203
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF22419.3 best HBoV_NS1-like_N 89.1 4.20e-25 89.8% 98.8%
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4kw3A00 3.40.1310.20 Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › 0.90 84.0 8.54e-01 100.0% 97.7%
6h8oA00 3.40.1310.20 Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › 0.78 28.0 4.84e-01 90.5% 94.7%
1l2mA00 3.40.1310.20 Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › 0.76 31.0 4.80e-01 90.9% 89.0%
4djbA00 3.30.70.2870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Mastadenovirus E4 ORF3 0.75 34.0 5.07e-01 73.4% 98.3%
1m55A00 3.40.1310.20 Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › 0.72 50.0 5.88e-01 97.4% 98.4%
1f08B00 3.40.1310.10 Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › 0.67 30.0 4.05e-01 96.4% 77.9%
1r9wA00 3.40.1310.10 Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › 0.66 29.0 4.13e-01 96.4% 82.6%
1xmbA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.66 27.0 4.32e-01 73.4% 100.0%
4fprB00 3.30.70.2910 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.63 29.0 4.17e-01 75.2% 92.2%
1iujA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 26.0 4.00e-01 95.6% 100.0%
1pbuA00 3.30.70.1010 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Translation elongation factor EF1B, gamma chain, conserved domain 0.59 32.0 4.11e-01 94.2% 87.7%
4dmzA02 3.30.70.2880 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 29.0 3.96e-01 100.0% 100.0%
4kh9A01 2.60.40.3870 Mainly Beta › Sandwich › Immunoglobulin-like › Uncharacterised protein PF16024, DUF4785 0.54 21.0 2.89e-01 72.3% 66.7%
4ndhB00 3.30.428.10 Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › HIT-like 0.52 27.0 3.22e-01 96.4% 72.5%
2g47A02 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.51 33.0 3.62e-01 74.5% 76.5%
2oi2A02 3.30.70.890 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain 0.51 26.0 3.66e-01 73.4% 99.3%
3mfiA04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.51 22.0 3.39e-01 71.9% 95.0%
5d79A03 3.40.462.20 Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › 0.50 29.0 3.48e-01 93.1% 81.3%
ECOD (29)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2966256 304.55.1.1 ↗ a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › Gemini_AL1 0.81 31.0 5.12e-01 90.5% 92.6%
2391478 304.55.1.5 ↗ a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › Viral_Rep 0.78 28.0 4.84e-01 90.5% 94.7%
2834623 304.55.1.7 ↗ a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › Rep_N 0.75 48.0 5.94e-01 96.0% 100.0%
2796430 304.55.1.5 ↗ a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › Viral_Rep 0.74 27.0 4.57e-01 90.5% 91.3%
4959045 304.8.1.81 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › REP_ORF2-G2P 0.73 38.0 5.04e-01 94.2% 90.0%
4880004 304.55.1.7 ↗ a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › Rep_N 0.72 50.0 5.76e-01 96.4% 92.3%
1491756 304.55.1.9 ↗ a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › PV_NSP1 0.71 61.0 6.40e-01 100.0% 97.6%
4218099 304.55.1.1 ↗ a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › Gemini_AL1 0.71 34.0 4.80e-01 90.5% 92.6%
3993060 304.47.1.1 ↗ a+b two layers › Alpha-beta plaits › SEA domain › SEA domain › SEA 0.68 31.0 4.62e-01 73.7% 97.5%
3959611 304.42.1.0 ↗ a+b two layers › Alpha-beta plaits › Molybdenum cofactor biosynthesis protein C, MoaC › Molybdenum cofactor biosynthesis protein C, MoaC 0.65 33.0 4.51e-01 73.4% 93.6%
4945880 304.42.1.1 ↗ a+b two layers › Alpha-beta plaits › Molybdenum cofactor biosynthesis protein C, MoaC › Molybdenum cofactor biosynthesis protein C, MoaC › MoaC 0.65 33.0 4.43e-01 74.1% 91.0%
3596967 304.46.1.0 ↗ a+b two layers › Alpha-beta plaits › eEF1-gamma domain › eEF1-gamma domain 0.63 32.0 4.17e-01 94.2% 84.2%
4030594 304.46.1.1 ↗ a+b two layers › Alpha-beta plaits › eEF1-gamma domain › eEF1-gamma domain › EF1G 0.63 33.0 4.24e-01 93.8% 85.6%
4007464 304.55.1.19 ↗ a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › Inovirus_Gp2 0.62 43.0 5.08e-01 94.5% 99.5%
3786175 304.46.1.1 ↗ a+b two layers › Alpha-beta plaits › eEF1-gamma domain › eEF1-gamma domain › EF1G 0.62 33.0 4.17e-01 94.2% 85.3%
4133039 304.8.1.81 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › REP_ORF2-G2P 0.61 36.0 4.59e-01 94.2% 95.8%
4025874 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.59 24.0 3.79e-01 75.2% 94.3%
4315665 304.8.1.91 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › DUF1424 0.59 41.0 4.67e-01 98.2% 91.9%
4511949 304.48.1.74 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › Phage_GPA 0.58 41.0 4.34e-01 94.5% 80.4%
3926520 304.8.1.23 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › Helitron_like_N 0.57 37.0 4.44e-01 93.8% 93.2%
3947798 304.8.1.70 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › Phage_GPA 0.57 41.0 4.06e-01 94.5% 69.6%
3598810 862.1.1.0 ↗ a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain 0.56 34.0 4.08e-01 97.8% 88.9%
None — 0.56 39.0 3.99e-01 98.2% 72.0%
3680601 304.8.1.23 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › Helitron_like_N 0.55 34.0 3.82e-01 95.3% 76.6%
3678501 304.55.1.20 ↗ a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › Helitron_like_N, REP_ORF2-G2P 0.55 38.0 3.78e-01 98.2% 65.6%
3377701 304.8.1.23 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › Helitron_like_N 0.54 39.0 4.41e-01 95.3% 94.8%
3235704 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.54 17.0 2.91e-01 89.4% 82.1%
3701881 304.25.1.0 ↗ a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain 0.52 36.0 4.20e-01 79.9% 100.0%
4447424 304.55.1.26 ↗ a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › RepSA 0.51 46.0 4.64e-01 98.2% 94.2%
D2 high residues 337-392
PDB
Domain cluster: rep: non-structural_protein_1__YP_009272913__Mink_bocavirus_1__2259808__D352-409
D3 high residues 415-614
PDB
Domain cluster: rep: MN062720.1__QDP45567.1__SEA_FUZZBUSTER_83__00083__D568-722_747-764
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01057.24 best Parvo_NS1 248.6 7.90e-74 94.0% 67.5%