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NS1

Euk-Vir

Lupine_bocavirus

NS1__YP_009551693__Lupine_bocavirus__2017714

Identity

Accession:: YP_009551693 ↗
Protein ID:: NS1
Kingdom:: euk

Quality

71.3 mean pLDDT

Taxonomy

Shotokuvirae› Cossaviricota› Quintoviricetes› Piccovirales› Parvoviridae› Bocaparvovirus› Lupine_bocavirus

TaxID: 2017714

Cluster

View cluster (44 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 335-393

PDB

Domain cluster: rep: non-structural_protein_1__YP_009272913__Mink_bocavirus_1__2259808__D352-409

D2 medium residues 14-42_127-148_229-318

PDB

Domain cluster: rep: NS1__YP_009508797__Miniopterus_schreibersii_bat_bocavirus__1911554__D13-31_203-299

CATH (3)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4kw3A00	3.40.1310.20	Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, ›	0.91	74.0	5.76e-01	83.7%	100.0%
1m55A00	3.40.1310.20	Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, ›	0.65	48.0	4.23e-01	75.9%	100.0%
2bvfA03	3.40.462.20	Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 ›	0.54	37.0	3.29e-01	70.9%	100.0%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4880004	304.55.1.7 ↗	a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › Rep_N	0.67	49.0	4.26e-01	75.9%	95.7%

D3 medium residues 43-126_149-228

PDB

Domain cluster: rep: NS1__YP_009552695__Rhinolophus_pusillus_bocaparvovirus_1__2053079__D4-183

CATH (8)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4kw3A00	3.40.1310.20	Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, ›	0.78	74.0	6.18e-01	100.0%	66.2%
4a25B01	1.20.1260.10	Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle	0.63	38.0	3.88e-01	87.2%	60.2%
2yjkC00	1.20.1260.10	Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle	0.61	37.0	3.79e-01	87.2%	61.8%
3fnbA01	1.20.1440.110	Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › acylaminoacyl peptidase	0.60	28.0	3.38e-01	78.7%	64.0%
2clbA01	1.20.1260.10	Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle	0.56	34.0	3.46e-01	88.4%	59.7%
2jo7A00	1.10.4170.10	Mainly Alpha › Orthogonal Bundle › Glycosylphosphatidylinositol-anchored merozoite surface protein › Glycosylphosphatidylinositol-anchored merozoite surface protein	0.55	29.0	2.62e-01	88.4%	34.8%
1x8zB00	1.20.140.40	Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Invertase/pectin methylesterase inhibitor family protein	0.54	34.0	3.60e-01	95.1%	70.1%
3hrdC02	3.30.390.50	Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain	0.51	32.0	3.79e-01	92.1%	92.9%

ECOD (9)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5055943	604.1.1.0 ↗	alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat	0.60	33.0	4.14e-01	81.1%	87.0%
3601904	604.12.1.0 ↗	alpha bundles › Spectrin repeat-like › MIT domain › MIT domain	0.57	40.0	4.34e-01	99.4%	85.9%
3827313	633.4.1.0 ↗	alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor	0.57	35.0	4.27e-01	86.6%	92.7%
5074225	604.5.1.0 ↗	alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895)	0.55	30.0	3.84e-01	81.7%	94.4%
3618827	5050.1.1.5 ↗	alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Folate_carrier	0.54	47.0	3.40e-01	95.1%	78.1%
4957442	603.1.1.0 ↗	alpha bundles › STAT-like › t-snare proteins › t-snare proteins	0.53	38.0	4.07e-01	93.3%	84.6%
3580282	604.1.1.0 ↗	alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat	0.53	32.0	3.77e-01	79.9%	82.5%
5038460	5079.1.1.1 ↗	alpha duplicates or obligate multimers › Magnesium transporter MgtE membrane domain › Magnesium transporter MgtE membrane domain › Magnesium transporter MgtE membrane domain › MgtE	0.53	39.0	3.82e-01	86.6%	70.0%
3701892	604.39.1.0 ↗	alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters	0.52	42.0	4.27e-01	99.4%	85.5%

D4 medium residues 396-441_585-613

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01057.24 best	Parvo_NS1	26.4	4.50e-06	65.3%	16.6%

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1ny9A00	1.10.490.50	Mainly Alpha › Orthogonal Bundle › Globin-like › Antibiotic binding domain of TipA-like multidrug resistance regulators	0.53	37.0	3.48e-01	73.3%	85.1%

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4290892	5069.1.1.15 ↗	alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › Cytochrom_C_asm	0.68	46.0	3.14e-01	70.7%	46.4%
3786791	101.1.2.169 ↗	alpha arrays › HTH › HTH › winged helix domain › PheRS_DBD3	0.53	37.0	3.39e-01	73.3%	71.0%

D5 medium residues 442-584_614-643

PDB

Domain cluster: rep: MN062720.1__QDP45567.1__SEA_FUZZBUSTER_83__00083__D568-722_747-764

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01057.24 best	Parvo_NS1	209.5	6.80e-62	91.3%	53.9%
PF00519.24	PPV_E1_C	37.1	3.00e-09	79.8%	43.2%