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NS1

Euk-Vir

Rousettus_leschenaultii_bocaparvovirus_1

NS1__YP_009553050__Rousettus_leschenaultii_bocaparvovirus_1__2053082

Identity

Accession:
YP_009553050 ↗
Protein ID:
NS1
Kingdom:
euk

Quality

74.9 mean pLDDT

Taxonomy

Shotokuvirae› Cossaviricota› Quintoviricetes› Piccovirales› Parvoviridae› Bocaparvovirus› Rousettus_leschenaultii_bocaparvovirus_1

TaxID: 2053082

Cluster

View cluster (44 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 12-275
PDB
Domain cluster: rep: NS1__YP_009507375__Chipmunk_parvovirus__56820__D1-203
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF22419.3 best HBoV_NS1-like_N 61.2 1.40e-16 54.9% 48.0%
PF22419.3 HBoV_NS1-like_N 42.8 5.90e-11 29.2% 28.1%
D2 medium residues 315-370
PDB
Domain cluster: rep: non-structural_protein_1__YP_009272913__Mink_bocavirus_1__2259808__D352-409
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01057.24 best Parvo_NS1 22.2 9.10e-05 98.2% 19.2%
D3 medium residues 371-420_440-497_561-588
PDB
Domain cluster: rep: NS1_protein__YP_009229908__Bat_bocavirus__1329649__D376-421_558-623
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF01057.24 best Parvo_NS1 82.2 4.50e-23 53.7% 21.8%
PF01057.24 Parvo_NS1 22.9 5.20e-05 37.5% 18.1%
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1u0jA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.83 79.0 6.70e-01 99.3% 97.1%
1z1vA00 1.10.150.50 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 0.55 24.0 3.26e-01 77.9% 78.6%
1c3pA00 3.40.800.20 Alpha Beta › 3-Layer(aba) Sandwich › Arginase; Chain A › Histone deacetylase domain 0.54 39.0 2.91e-01 74.3% 70.7%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3479645 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.83 64.0 5.74e-01 79.4% 73.3%
3474509 2004.1.1.57 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Parvo_NS1 0.82 63.0 5.82e-01 79.4% 78.2%
2704206 2004.1.1.57 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Parvo_NS1 0.80 76.0 5.87e-01 100.0% 75.0%
D4 medium residues 421-439_498-560
PDB
Domain cluster: rep: E1__YP_004306468__Camelus_dromedarius_papillomavirus_1__996650__D451-468_541-589
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF01057.24 best Parvo_NS1 62.5 4.40e-17 78.0% 23.2%
PF01057.24 Parvo_NS1 22.6 6.70e-05 24.4% 7.0%
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1u0jA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.91 87.0 6.19e-01 100.0% 65.0%
2c9oA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.68 54.0 4.02e-01 84.1% 73.0%
3upuA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.63 50.0 3.95e-01 86.6% 87.5%
2zpaA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.62 51.0 4.25e-01 87.8% 94.9%
3od1A02 3.40.50.12590 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.58 40.0 4.57e-01 84.1% 98.3%
3g68B01 3.40.50.10490 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 0.55 49.0 3.66e-01 100.0% 71.8%
2bgiA02 3.40.50.80 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module 0.54 43.0 3.45e-01 84.1% 95.5%
3fvwB00 3.40.50.360 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain 0.53 46.0 3.62e-01 98.8% 94.0%
4a8jB00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.53 45.0 3.44e-01 100.0% 89.1%
5gotA00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.53 47.0 3.90e-01 100.0% 89.3%
1fdrA02 3.40.50.80 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module 0.53 41.0 3.37e-01 84.1% 94.1%
1puiA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 46.0 3.65e-01 100.0% 86.4%
2fh5B00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 46.0 3.51e-01 98.8% 94.7%
1f6bB00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 46.0 3.56e-01 100.0% 87.2%
3t38A02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.51 46.0 3.97e-01 100.0% 92.2%
3sq3A01 3.30.870.10 Alpha Beta › 2-Layer Sandwich › Endonuclease; Chain A › Endonuclease Chain A 0.51 35.0 2.73e-01 70.7% 72.0%
3tauA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 46.0 3.89e-01 100.0% 82.0%
5xc5A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.50 44.0 3.53e-01 100.0% 92.2%
4basA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.50 44.0 3.51e-01 100.0% 91.3%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2704206 2004.1.1.57 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Parvo_NS1 0.90 84.0 5.64e-01 100.0% 50.7%
3599788 2004.1.1.292 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AFG1_ATPase 0.75 62.0 4.41e-01 89.0% 68.9%
5022020 2004.1.1.409 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF5906 0.71 64.0 4.47e-01 100.0% 58.9%
3601026 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.65 50.0 3.83e-01 81.7% 90.7%
3931102 2004.1.1.98 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rad17 0.65 50.0 3.77e-01 82.9% 76.4%
3962393 2004.1.1.201 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_26 0.61 54.0 4.00e-01 100.0% 94.2%
5024667 2004.1.1.5 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.60 49.0 3.35e-01 86.6% 86.8%
3357282 2004.1.1.56 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › NB-ARC 0.59 48.0 4.21e-01 85.4% 83.5%
4645406 7514.1.1.1 ↗ a/b three-layered sandwiches › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › NAD_binding_1 0.54 42.0 3.44e-01 84.1% 66.5%
3590516 2003.1.1.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains 0.54 36.0 3.32e-01 82.9% 51.8%
4027367 2004.1.1.571 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras, MMR_HSR1 0.52 47.0 3.49e-01 100.0% 91.0%
4966116 2004.1.1.210 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ERCC3_RAD25_C 0.52 40.0 3.11e-01 82.9% 95.3%
3358473 2004.1.1.19 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras 0.52 42.0 3.92e-01 86.6% 85.0%
4305804 7514.1.1.1 ↗ a/b three-layered sandwiches › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › NAD_binding_1 0.52 40.0 3.28e-01 84.1% 67.3%
4937009 2007.6.1.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Ribosomal protein S2/SIS domain › Ribosomal protein S2/SIS domain 0.51 45.0 3.73e-01 100.0% 83.4%
1289515 2007.6.1.4 ↗ a/b three-layered sandwiches › Flavodoxin-like › Ribosomal protein S2/SIS domain › Ribosomal protein S2/SIS domain › SIS 0.50 45.0 3.59e-01 100.0% 79.3%
4145378 2005.1.1.11 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ATP_bind_3 0.50 42.0 3.06e-01 92.7% 74.3%
3433221 7512.1.1.0 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase 0.50 37.0 2.68e-01 80.5% 90.9%
2604397 2007.25.1.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Rossmann-like domain in Ribosomal protein L1 › Rossmann-like domain in Ribosomal protein L1 › Ribosomal_L1 0.50 39.0 3.74e-01 86.6% 94.9%