←Back to structures
NS1_protein
Euk-VirCorriparta_virus
NS1_protein__YP_009507677__Corriparta_virus__40053
Identity
- Accession:
- YP_009507677 ↗
- Protein ID:
- NS1_protein
- Kingdom:
- euk
Quality
73.6
mean pLDDT
Taxonomy
Orthornavirae›
Duplornaviricota›
Resentoviricetes›
Reovirales›
Sedoreoviridae›
Orbivirus›
Corriparta_virus
TaxID: 40053
Cluster
View cluster (12 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-101
Domain cluster:
rep: tubule_protein__YP_009158886__Wad_Medani_virus__40067__D1-96
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01718.24 best | Orbi_NS1 | 91.2 | 7.20e-26 | 97.0% | 16.0% |
CATH (17)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3d1uA03 | 1.20.1270.240 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.67 | 47.0 | 4.73e-01 | 85.0% | 72.3% |
| 1u61A00 | 1.10.1520.10 | Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III domain | 0.61 | 47.0 | 4.33e-01 | 82.0% | 91.3% |
| 4mndA02 | 1.20.120.1760 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CDP-alcohol phosphotransferase transmembrane (TM) domain | 0.58 | 47.0 | 3.88e-01 | 91.0% | 53.9% |
| 5nohA00 | 1.20.120.1350 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Pneumovirus matrix protein 2 (M2), zinc-binding domain | 0.54 | 42.0 | 4.19e-01 | 84.0% | 97.1% |
| 5g5gA02 | 1.10.150.120 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › [2Fe-2S]-binding domain | 0.53 | 34.0 | 3.54e-01 | 80.0% | 70.0% |
| 3owaA03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.53 | 40.0 | 3.41e-01 | 82.0% | 71.3% |
| 6p73A02 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.52 | 40.0 | 3.61e-01 | 83.0% | 62.9% |
| 6iknD01 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.52 | 42.0 | 3.12e-01 | 88.0% | 87.6% |
| 4x28A01 | 1.10.540.10 | Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain | 0.51 | 31.0 | 3.04e-01 | 73.0% | 53.1% |
| 2qguA02 | 1.10.10.640 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › phospholipid-binding protein | 0.51 | 38.0 | 4.17e-01 | 92.0% | 100.0% |
| 3h37A03 | 1.20.58.1960 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.51 | 35.0 | 3.30e-01 | 71.0% | 86.7% |
| 4akgA11 | 1.20.920.20 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › | 0.51 | 42.0 | 3.09e-01 | 91.0% | 66.7% |
| 4x28C03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.50 | 38.0 | 3.43e-01 | 81.0% | 69.2% |
| 2nscA01 | 3.30.70.1050 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Trigger factor ribosome-binding domain | 0.50 | 30.0 | 3.32e-01 | 70.0% | 74.4% |
| 2lmgA00 | 1.20.1270.10 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.50 | 36.0 | 4.01e-01 | 84.0% | 100.0% |
| 3dl1A01 | 1.10.472.150 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Glucose-regulated metallo-peptidase M90, N-terminal domain | 0.50 | 34.0 | 3.48e-01 | 89.0% | 70.7% |
| 1jogA00 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.50 | 37.0 | 3.46e-01 | 81.0% | 89.6% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5000283 | 2006.1.2.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › DHH phosphoesterases | 0.64 | 51.0 | 3.98e-01 | 87.0% | 90.7% |
| 3785916 | 3559.1.1.40 ↗ | a+b complex topology › Mediator of RNA polymerase II transcription subunit 22 › Mediator of RNA polymerase II transcription subunit 22 › Mediator of RNA polymerase II transcription subunit 22 › Bap31 | 0.64 | 37.0 | 3.58e-01 | 70.0% | 50.9% |
| 4180013 | 1128.1.1.8 ↗ | alpha bundles › LYR protein › LYR protein › LYR protein › PF29574 | 0.63 | 45.0 | 4.69e-01 | 83.0% | 83.3% |
| 3589888 | 4275.1.1.0 ↗ | alpha arrays › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like | 0.56 | 35.0 | 3.63e-01 | 87.0% | 67.8% |
| 3726875 | 632.22.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats | 0.56 | 43.0 | 4.56e-01 | 88.0% | 91.1% |
| 3479273 | 611.10.1.0 ↗ | alpha bundles › N-cbl like › DAXX helical bundle domain › DAXX helical bundle domain | 0.55 | 41.0 | 4.51e-01 | 92.0% | 98.8% |
| 4994150 | 632.18.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › hypothetical protein PA2901 › hypothetical protein PA2901 | 0.54 | 40.0 | 4.10e-01 | 79.0% | 85.3% |
| 3958500 | 628.1.1.1 ↗ | alpha bundles › Fatty acid responsive transcription factor FadR, C-terminal domain › Fatty acid responsive transcription factor FadR, C-terminal domain › Fatty acid responsive transcription factor FadR, C-terminal domain › FCD | 0.52 | 42.0 | 3.63e-01 | 86.0% | 76.1% |
| 4206404 | 103.4.1.26 ↗ | alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Rod-binding | 0.51 | 34.0 | 3.56e-01 | 75.0% | 72.6% |
| 3408939 | 3938.1.1.1 ↗ | alpha arrays › Heterogeneous nuclear ribonucleoprotein Q acidic domain › Heterogeneous nuclear ribonucleoprotein Q acidic domain › Heterogeneous nuclear ribonucleoprotein Q acidic domain › hnRNP_Q_AcD | 0.50 | 36.0 | 3.68e-01 | 93.0% | 80.0% |
D2
high
residues 148-335
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01718.24 best | Orbi_NS1 | 182.3 | 1.80e-53 | 100.0% | 36.6% |
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2yx1A02 | 3.30.300.110 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › Met-10+ protein-like domains | 0.60 | 22.0 | 3.29e-01 | 83.5% | 76.6% |
| 3kxwA02 | 3.30.300.30 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain | 0.54 | 28.0 | 3.30e-01 | 81.4% | 71.8% |
| 4g1iA03 | 3.30.70.1770 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 19.0 | 3.08e-01 | 80.3% | 88.4% |
| 3og2A03 | 2.60.390.10 | Mainly Beta › Sandwich › beta-galactosidase, domain 3 › Beta-galactosidase, domain 3 | 0.50 | 20.0 | 2.78e-01 | 78.2% | 71.9% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4983257 | 327.11.1.5 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) › KH_7 | 0.65 | 22.0 | 3.72e-01 | 79.8% | 86.2% |
| 5054316 | 327.11.1.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) › KH_2 | 0.65 | 23.0 | 3.67e-01 | 80.9% | 81.3% |
| 3944105 | 327.6.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Fe-S cluster assembly (FSCA) domain-like › Fe-S cluster assembly (FSCA) domain-like | 0.59 | 24.0 | 3.47e-01 | 79.3% | 82.5% |
| 5057096 | 3261.1.1.1 ↗ | a+b two layers › amino-terminal domain of OmpATb › amino-terminal domain of OmpATb › amino-terminal domain of OmpATb › BON | 0.56 | 18.0 | 2.98e-01 | 76.1% | 76.9% |
| 3388258 | 327.6.1.2 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Fe-S cluster assembly (FSCA) domain-like › Fe-S cluster assembly (FSCA) domain-like › FeS_assembly_P | 0.55 | 21.0 | 3.20e-01 | 78.2% | 85.3% |
| 3839723 | 327.6.1.2 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Fe-S cluster assembly (FSCA) domain-like › Fe-S cluster assembly (FSCA) domain-like › FeS_assembly_P | 0.52 | 21.0 | 3.07e-01 | 79.8% | 83.7% |
| 4291980 | 327.4.1.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › YhbC-like, N-terminal domain › YhbC-like, N-terminal domain › RimP_N | 0.51 | 22.0 | 2.99e-01 | 72.9% | 76.7% |
| 4953039 | 327.6.1.2 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Fe-S cluster assembly (FSCA) domain-like › Fe-S cluster assembly (FSCA) domain-like › FeS_assembly_P | 0.51 | 23.0 | 3.23e-01 | 85.6% | 88.2% |
D3
high
residues 352-492
Domain cluster:
rep: NS1__YP_009047261__Umatilla_virus__40060__D360-470_515-530
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01718.24 best | Orbi_NS1 | 157.1 | 7.90e-46 | 100.0% | 27.1% |
D4
medium
residues 102-135_493-548