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NS2

Euk-Vir

Rat_bocavirus

NS2__YP_009227290__Rat_bocavirus__1788315

Identity

Accession:: YP_009227290 ↗
Protein ID:: NS2
Kingdom:: euk

Quality

79.6 mean pLDDT

Taxonomy

Shotokuvirae› Cossaviricota› Quintoviricetes› Piccovirales› Parvoviridae› Bocaparvovirus› Rat_bocavirus

TaxID: 1788315

Cluster

View cluster (44 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 313-370

PDB

Domain cluster: rep: non-structural_protein_1__YP_009272913__Mink_bocavirus_1__2259808__D352-409

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01057.24 best	Parvo_NS1	21.6	1.40e-04	100.0%	18.8%

D2 high residues 387-609

PDB

Domain cluster: rep: MN062720.1__QDP45567.1__SEA_FUZZBUSTER_83__00083__D568-722_747-764

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01057.24 best	Parvo_NS1	249.6	3.90e-74	88.8%	67.2%
PF00519.24	PPV_E1_C	27.1	3.30e-06	75.3%	52.6%

D3 medium residues 11-32_109-129_194-216

PDB

Domain cluster: representative

CATH (4)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2x3gA00	3.30.70.1910	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.62	53.0	4.40e-01	95.5%	89.7%
4za1C00	3.30.70.100	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.59	42.0	3.72e-01	74.2%	100.0%
4i6yA02	3.30.70.420	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Hydroxymethylglutaryl-CoA reductase, class I/II, NAD/NADP-binding domain	0.54	38.0	3.19e-01	72.7%	100.0%
1tz0B00	3.30.70.100	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.52	36.0	3.20e-01	72.7%	94.8%

ECOD (6)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3533042	304.5.1.0 ↗	a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like	0.57	41.0	3.66e-01	77.3%	84.2%
4877694	304.51.1.3 ↗	a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR_assoc	0.54	37.0	3.08e-01	71.2%	96.6%
3456323	11.1.5.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f	0.54	30.0	2.59e-01	95.5%	32.4%
4098707	304.159.1.1 ↗	a+b two layers › Alpha-beta plaits › Alpha-beta plait domain in NisB › Alpha-beta plait domain in NisB › Lant_dehydr_C	0.53	39.0	3.36e-01	77.3%	92.0%
1681454	304.166.1.9 ↗	a+b two layers › Alpha-beta plaits › Nup54 ferredoxin-like domain › Nup54 ferredoxin-like domain › PF29949	0.53	37.0	3.16e-01	75.8%	74.1%
3281255	101.1.2.742 ↗	alpha arrays › HTH › HTH › winged helix domain › DUF7782	0.50	42.0	3.57e-01	100.0%	92.5%

D4 medium residues 33-108_130-193

PDB

Domain cluster: rep: NS1__YP_009552695__Rhinolophus_pusillus_bocaparvovirus_1__2053079__D4-183

CATH (13)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4kw3A00	3.40.1310.20	Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, ›	0.86	81.0	6.40e-01	100.0%	62.8%
2lt3A01	1.20.58.1290	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › CarD-like, C-terminal domain	0.60	29.0	3.35e-01	83.6%	63.0%
2v6yA00	1.20.58.80	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit	0.57	30.0	3.92e-01	85.0%	93.3%
3k1zA02	1.10.150.720	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Haloacid dehalogenase-like hydrolase	0.56	33.0	4.10e-01	100.0%	97.6%
2fzfA01	1.20.1260.10	Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle	0.54	45.0	4.43e-01	96.4%	82.7%
2ib0A01	1.20.1260.10	Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle	0.54	40.0	4.12e-01	97.1%	80.7%
3lmfA00	1.20.1270.360	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 ›	0.52	35.0	3.88e-01	97.1%	86.2%
4a25B01	1.20.1260.10	Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle	0.52	42.0	4.06e-01	97.1%	75.2%
5ffdA00	1.20.1260.10	Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle	0.51	40.0	4.06e-01	97.1%	83.2%
2oduA02	1.20.58.60	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.51	34.0	3.88e-01	86.4%	89.5%
3r2kA00	1.20.1260.10	Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle	0.51	39.0	3.85e-01	97.1%	74.0%
7yu4A01	1.20.1070.10	Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins	0.51	44.0	3.63e-01	95.7%	79.4%
6vudA01	1.10.132.20	Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor	0.50	35.0	3.88e-01	90.7%	90.8%

ECOD (10)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3489579	5050.1.1.0 ↗	alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter	0.59	48.0	3.35e-01	88.6%	85.9%
3764108	5050.1.1.9 ↗	alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1	0.59	49.0	3.44e-01	89.3%	76.8%
3288812	5050.1.1.55 ↗	alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Sugar_tr, MFS_1	0.56	42.0	2.93e-01	77.9%	37.9%
3763723	601.1.2.0 ↗	alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608)	0.55	39.0	3.98e-01	97.1%	73.6%
3879373	621.1.1.1 ↗	alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › GBP_C	0.54	39.0	2.91e-01	75.0%	81.1%
4950677	1075.1.1.3 ↗	alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain › ABC2_membrane_2	0.53	44.0	3.61e-01	89.3%	66.0%
3667525	109.4.1.1656 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF27769	0.53	38.0	3.20e-01	73.6%	90.6%
3929291	1076.1.1.2 ↗	alpha bundles › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › Aph-1	0.53	43.0	3.88e-01	87.9%	80.5%
3786455	5076.1.1.1 ↗	alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr	0.51	45.0	3.62e-01	100.0%	93.0%
3271583	1075.1.1.25 ↗	alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain › EMP70	0.50	45.0	3.41e-01	100.0%	91.6%

D5 medium residues 217-273

PDB

Domain cluster: representative

CATH (5)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4kw3A00	3.40.1310.20	Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, ›	0.96	90.0	5.57e-01	100.0%	21.8%
6bfnB02	1.10.510.10	Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1	0.56	42.0	2.99e-01	84.2%	65.3%
1xx1A00	3.20.20.190	Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphatidylinositol (PI) phosphodiesterase	0.55	46.0	3.05e-01	100.0%	92.3%
4qa9A00	3.40.50.1820	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain	0.53	40.0	2.57e-01	93.0%	75.5%
3fj1A02	3.40.50.10490	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1	0.52	42.0	3.39e-01	100.0%	92.6%