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NS2a3_protein

Euk-Vir

Rabbit_coronavirus_HKU14

NS2a3_protein__YP_005454242__Rabbit_coronavirus_HKU14__1160968

Identity

Accession:
YP_005454242 ↗
Protein ID:
NS2a3_protein
Kingdom:
euk

Quality

71.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-42
PDB
Domain cluster: representative
CATH (48)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5xoyB02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.73 61.0 4.65e-01 100.0% 54.2%
7t4dA01 2.70.240.10 Mainly Beta › Distorted Sandwich › Leukocidin-like › Leukocidin/porin MspA 0.70 48.0 2.87e-01 71.4% 10.1%
2lnjA00 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.70 58.0 3.96e-01 100.0% 31.8%
2i4kA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.67 46.0 3.32e-01 76.2% 24.2%
1xteA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.66 45.0 3.39e-01 73.8% 26.7%
2yqzA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.66 54.0 3.55e-01 95.2% 25.4%
3iq2A00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.66 45.0 3.32e-01 73.8% 25.2%
1x49A01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.66 49.0 4.30e-01 88.1% 60.0%
2gjvA00 3.30.2000.10 Alpha Beta › 2-Layer Sandwich › STM4215-like › Phage tail protein-like 0.65 53.0 3.86e-01 100.0% 37.5%
2v14A00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.65 45.0 3.20e-01 73.8% 23.1%
1f49A05 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.64 50.0 3.14e-01 97.6% 32.8%
4inaA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.63 48.0 3.19e-01 90.5% 58.4%
1x51A01 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.63 52.0 3.73e-01 100.0% 65.0%
3lw6A00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.63 53.0 3.37e-01 100.0% 93.8%
1yqyA01 3.90.176.10 Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 0.63 51.0 3.31e-01 95.2% 53.9%
1f0lA03 2.60.40.700 Mainly Beta › Sandwich › Immunoglobulin-like › Diphtheria toxin, receptor-binding domain 0.62 48.0 3.47e-01 100.0% 44.2%
1novA00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.61 45.0 2.86e-01 97.6% 45.0%
5jenA01 3.30.565.40 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Fervidobacterium nodosum Rt17-B1 like 0.61 47.0 3.73e-01 100.0% 52.3%
4lgvD02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.60 43.0 2.63e-01 78.6% 22.3%
3anzC00 2.70.240.10 Mainly Beta › Distorted Sandwich › Leukocidin-like › Leukocidin/porin MspA 0.58 41.0 2.56e-01 81.0% 11.9%
2mdrA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.58 43.0 3.51e-01 88.1% 42.6%
1el6A02 2.20.20.20 Mainly Beta › Single Sheet › Anthopleurin-A › Baseplate structural protein gp11, C-terminal domain 0.58 43.0 4.23e-01 92.9% 78.7%
1qs1A01 3.90.176.10 Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 0.58 46.0 3.05e-01 95.2% 57.1%
2wn5A01 3.90.176.10 Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 0.58 46.0 3.10e-01 97.6% 58.8%
2fdoA00 3.30.1970.10 Alpha Beta › 2-Layer Sandwich › AF2331-like fold › AF2331-like 0.57 51.0 3.95e-01 100.0% 61.3%
7mwzD01 3.40.50.12100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Stimulator of interferon genes protein 0.57 42.0 2.90e-01 85.7% 19.4%
4tw1B00 2.70.240.10 Mainly Beta › Distorted Sandwich › Leukocidin-like › Leukocidin/porin MspA 0.57 43.0 2.76e-01 100.0% 70.6%
6toaE01 2.40.10.270 Mainly Beta › Beta Barrel › Thrombin, subunit H › Bacteriophage SPP1 head-tail adaptor protein 0.57 41.0 3.25e-01 81.0% 95.9%
3uwpA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.56 42.0 2.77e-01 90.5% 34.5%
1vb5B02 3.40.50.10470 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Translation initiation factor eif-2b; domain 2 0.56 38.0 2.58e-01 71.4% 44.8%
3ix9A00 3.40.430.10 Alpha Beta › 3-Layer(aba) Sandwich › Dihydrofolate Reductase, subunit A › Dihydrofolate Reductase, subunit A 0.55 43.0 3.03e-01 95.2% 93.4%
4y6iA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 44.0 3.53e-01 97.6% 85.4%
6qdwt00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.55 40.0 3.40e-01 92.9% 87.1%
5wtzA01 3.90.176.10 Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 0.55 43.0 2.88e-01 97.6% 54.0%
5jtwA01 2.60.40.1930 Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain 0.55 41.0 3.09e-01 97.6% 67.6%
4iyqA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 40.0 3.30e-01 97.6% 84.1%
4e98C00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 41.0 3.32e-01 97.6% 84.8%
2fkbC00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.54 41.0 2.94e-01 97.6% 67.7%
3ahpA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 40.0 3.30e-01 97.6% 84.0%
5ig0A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 41.0 3.15e-01 100.0% 69.5%
2w9hA00 3.40.430.10 Alpha Beta › 3-Layer(aba) Sandwich › Dihydrofolate Reductase, subunit A › Dihydrofolate Reductase, subunit A 0.53 40.0 2.90e-01 92.9% 94.9%
1nxmA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.53 42.0 2.84e-01 97.6% 41.2%
2j3xA01 3.90.176.10 Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 0.53 41.0 2.72e-01 95.2% 51.8%
7bj4A01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.52 42.0 2.52e-01 100.0% 27.5%
4emeC02 2.30.250.10 Mainly Beta › Roll › Aminopeptidase i, Domain 2 › Aminopeptidase i, Domain 2 0.52 32.0 2.33e-01 81.0% 18.5%
2gxfA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 40.0 3.09e-01 95.2% 53.4%
2epbA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.51 34.0 3.04e-01 71.4% 41.2%
4l4qA03 3.30.300.10 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › 0.50 39.0 3.01e-01 100.0% 87.2%
ECOD (46)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5073773 304.25.1.1 a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer 0.72 60.0 4.47e-01 100.0% 48.3%
3500621 2500.1.1.2 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.71 54.0 3.08e-01 88.1% 45.8%
4802890 3274.1.1.0 extended segments › N-terminal region in 40S ribosomal protein rpS2 (S5p) › N-terminal region in 40S ribosomal protein rpS2 (S5p) › N-terminal region in 40S ribosomal protein rpS2 (S5p) 0.70 49.0 3.90e-01 76.2% 96.7%
1919434 3274.1.1.1 extended segments › N-terminal region in 40S ribosomal protein rpS2 (S5p) › N-terminal region in 40S ribosomal protein rpS2 (S5p) › N-terminal region in 40S ribosomal protein rpS2 (S5p) › Ribosomal_S5 0.69 50.0 4.10e-01 81.0% 54.7%
3400775 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.69 58.0 4.23e-01 100.0% 76.0%
3513396 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.69 47.0 3.12e-01 73.8% 17.2%
3564807 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.67 45.0 3.15e-01 73.8% 20.0%
3723863 4002.1.1.0 alpha bundles › alpha-helical domain in dehydroquinate synthase-like enzymes › alpha-helical domain in dehydroquinate synthase-like enzymes › alpha-helical domain in dehydroquinate synthase-like enzymes 0.65 51.0 3.34e-01 97.6% 64.1%
3863194 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.65 44.0 3.27e-01 73.8% 23.8%
4024970 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.64 51.0 2.99e-01 97.6% 22.6%
3995550 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.62 42.0 3.30e-01 71.4% 29.0%
3422000 11.1.5.29 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › Sec23_BS 0.62 42.0 3.32e-01 76.2% 30.5%
3936858 11.12.1.2 beta sandwiches › Immunoglobulin-like beta-sandwich › Nicotinic receptor ligand binding domain-like › Nicotinic receptor ligand binding domain-like › Neur_chan_LBD,Neur_chan_memb 0.61 49.0 2.89e-01 100.0% 41.6%
3742215 2.1.1.44 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Dna2 0.61 42.0 3.37e-01 83.3% 35.6%
3554073 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.61 41.0 3.01e-01 73.8% 23.1%
4997962 304.139.1.2 a+b two layers › Alpha-beta plaits › Cas7-related › CRISPR-associated protein Cas7/Csa2-related › RAMPs 0.61 43.0 2.76e-01 83.3% 94.6%
3944481 5084.1.1.38 beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › Toluene_X 0.60 43.0 3.06e-01 81.0% 45.9%
2701957 6023.1.1.1 beta barrels › Restriction endonuclease PabI › Restriction endonuclease PabI › Restriction endonuclease PabI › RE_R_Pab1 0.58 39.0 2.52e-01 71.4% 24.8%
3450207 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 38.0 3.05e-01 73.8% 27.9%
4966859 304.51.1.8 a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › Cas6b_C 0.58 43.0 3.78e-01 90.5% 68.0%
3196896 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.58 47.0 2.86e-01 95.2% 15.1%
4979626 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.58 43.0 3.29e-01 95.2% 70.8%
4970825 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.57 41.0 2.88e-01 76.2% 21.3%
5025925 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.57 43.0 3.11e-01 100.0% 85.9%
2997715 11.13.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › Leukocidin-like › Leukocidin-like › Leukocidin 0.57 39.0 2.51e-01 81.0% 12.9%
3991702 389.2.1.3 few secondary structure elements › EGF-like › Serine protease inhibitors › Serine protease inhibitors › TIL_2 0.57 41.0 4.02e-01 83.3% 91.7%
1144777 4.25.1.0 beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain 0.56 46.0 3.59e-01 100.0% 72.1%
3991838 389.1.1.47 few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › TIL_2 0.55 43.0 3.89e-01 90.5% 73.0%
3914722 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 38.0 3.29e-01 76.2% 41.3%
3924156 11.2.1.16 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › PKC_C2 0.55 39.0 2.92e-01 81.0% 52.0%
3356712 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.54 45.0 4.43e-01 95.2% 97.8%
3990370 387.1.1.0 few secondary structure elements › omega toxin-like › omega toxin-related › omega toxin-related 0.54 41.0 3.79e-01 95.2% 73.8%
3268123 192.15.1.184 alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › RA 0.53 39.0 3.08e-01 85.7% 59.0%
4069753 295.1.1.2 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › SsgA 0.53 43.0 3.09e-01 95.2% 63.0%
3962429 221.4.1.0 a+b two layers › beta-Grasp › Nudix › Nudix 0.53 39.0 3.08e-01 95.2% 97.5%
3330406 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.53 41.0 3.73e-01 85.7% 60.0%
3642625 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.53 42.0 3.52e-01 100.0% 74.1%
3491527 11.1.1.629 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF4517 0.53 43.0 3.20e-01 97.6% 60.8%
3990850 389.4.1.7 few secondary structure elements › EGF-like › Fibulin-4 EGF-like 1 domain › Fibulin-4 EGF-like 1 domain › TIL_2 0.53 44.0 3.92e-01 95.2% 70.8%
3650904 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.53 41.0 3.37e-01 100.0% 67.4%
3995060 11.1.4.67 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › PKC_C2 0.52 37.0 3.04e-01 81.0% 67.4%
4342212 304.8.1.5 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NIL 0.52 43.0 3.44e-01 100.0% 47.4%
3430287 5.1.3.142 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_AT5G49610-like 0.52 40.0 2.49e-01 100.0% 13.1%
4857726 704.1.1.0 beta complex topology › Coronavirus RNA-binding domain (N-terminal part of Pfam 00937) › Coronavirus RNA-binding domain (N-terminal part of Pfam 00937) › Coronavirus RNA-binding domain (N-terminal part of Pfam 00937) 0.52 40.0 3.11e-01 97.6% 42.7%
5028199 3124.1.1.1 beta sandwiches › Nascent polypeptide-associated complex (NAC) dimerization domain › Nascent polypeptide-associated complex (NAC) dimerization domain › Nascent polypeptide-associated complex (NAC) dimerization domain › NAC 0.52 38.0 3.73e-01 88.1% 73.3%
4260211 4967.1.1.6 alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › Intron_maturas2 0.52 36.0 2.72e-01 81.0% 41.9%