←Back to structures
NS38
Euk-VirScophthalmus_maximus_reovirus
NS38__YP_009507753__Scophthalmus_maximus_reovirus__994485
Identity
- Accession:
- YP_009507753 ↗
- Protein ID:
- NS38
- Kingdom:
- euk
Quality
72.2
mean pLDDT
Taxonomy
Orthornavirae›
Duplornaviricota›
Resentoviricetes›
Reovirales›
Spinareoviridae›
Aquareovirus›
Scophthalmus_maximus_reovirus
TaxID: 994485
Cluster
View cluster (11 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 50-65_82-167_228-257
Domain cluster:
representative
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3ajwA00 | 1.10.287.1700 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.65 | 34.0 | 3.46e-01 | 75.8% | 51.5% |
| 7jpxA02 | 1.20.120.350 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C | 0.54 | 38.0 | 3.99e-01 | 72.7% | 84.3% |
| 1aepA00 | 1.20.120.20 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Apolipoprotein | 0.53 | 47.0 | 4.49e-01 | 97.0% | 98.0% |
| 8cdaB03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.52 | 37.0 | 3.49e-01 | 72.7% | 91.8% |
| 3mkkA02 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.52 | 46.0 | 3.30e-01 | 97.0% | 95.8% |
| 2becA00 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.51 | 35.0 | 3.25e-01 | 72.7% | 97.2% |
| 4m70I00 | 1.20.5.4130 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.50 | 37.0 | 4.04e-01 | 100.0% | 92.6% |
| 1jmwA00 | 1.20.120.30 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Aspartate receptor, ligand-binding domain | 0.50 | 45.0 | 4.37e-01 | 100.0% | 88.4% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4293088 | 2498.1.1.10 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M48 | 0.60 | 42.0 | 3.29e-01 | 72.7% | 72.3% |
| 3252860 | 609.1.1.0 ↗ | alpha bundles › Domain of poly(ADP-ribose) polymerase › Domain of poly(ADP-ribose) polymerase › Domain of poly(ADP-ribose) polymerase | 0.55 | 38.0 | 3.80e-01 | 71.2% | 87.9% |
| 3451722 | 3930.1.1.0 ↗ | alpha bundles › Helical bundle insertion in helicase domains › Helical bundle in Hef helicase › Helical bundle in Hef helicase | 0.55 | 39.0 | 4.01e-01 | 72.7% | 100.0% |
| 3613737 | 5076.1.1.1 ↗ | alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr | 0.54 | 41.0 | 3.16e-01 | 78.8% | 94.5% |
| 5041369 | 633.15.1.2 ↗ | alpha bundles › Bromodomain-like › alpha-ketoacid dehydrogenase kinase-N › alpha-ketoacid dehydrogenase kinase-N › Alpha_Helical | 0.53 | 34.0 | 3.64e-01 | 92.4% | 73.0% |
| 3922458 | 150.3.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › 4-helical cytokines › 4-helical cytokine | 0.53 | 31.0 | 3.09e-01 | 97.0% | 53.3% |
| 3885611 | 150.3.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › 4-helical cytokines › 4-helical cytokine | 0.53 | 37.0 | 3.51e-01 | 72.0% | 87.5% |
| 3785454 | 4006.1.1.0 ↗ | alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain | 0.52 | 39.0 | 4.38e-01 | 95.5% | 100.0% |
D2
medium
residues 168-227_258-350
Domain cluster:
rep: Sigma_NS__YP_009246470__Mahlapitsi_orthoreovirus__2170064__D179-246_283-370
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3dxqA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.64 | 22.0 | 2.98e-01 | 86.9% | 54.2% |
| 1q7hA01 | 3.10.450.120 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Pre-PUA domain; domain 1 | 0.64 | 25.0 | 3.62e-01 | 88.2% | 80.0% |
| 2o30A00 | 2.60.40.790 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.52 | 21.0 | 2.78e-01 | 89.5% | 65.9% |
| 5tw4A02 | 2.30.140.20 | Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Penicillin-binding protein 4, C-terminal domain | 0.52 | 22.0 | 3.15e-01 | 95.4% | 85.5% |
| 4o5vA03 | 2.30.30.90 | Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) | 0.51 | 24.0 | 3.11e-01 | 94.8% | 80.3% |
| 2c1iA02 | 3.90.640.30 | Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › | 0.51 | 26.0 | 3.55e-01 | 94.8% | 98.7% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5067171 | 243.6.1.1 ↗ | a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › DUF1947 | 0.61 | 23.0 | 3.43e-01 | 86.9% | 78.5% |
| 3951704 | 103.12.1.0 ↗ | alpha arrays › RuvA-C › ANTAR domain › ANTAR domain | 0.60 | 29.0 | 4.12e-01 | 96.1% | 100.0% |
| 3246415 | 10.1.1.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases | 0.55 | 31.0 | 3.37e-01 | 92.8% | 64.8% |