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NS5

Euk-Vir

Karumba_virus

NS5__YP_009389249__Karumba_virus__1969397

Identity

Accession:
YP_009389249 ↗
Protein ID:
NS5
Kingdom:
euk

Quality

86.9 mean pLDDT

Taxonomy

Orthornavirae› Kitrinoviricota› Flasuviricetes› Amarillovirales› Flaviviridae› Karumba_virus

TaxID: 1969397

Cluster

View cluster (51 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 699-877
PDB
Domain cluster: rep: RNA-dependent_RNA_polymerase_NS5__YP_009268628__Hanko_virus__1125677__D698-878
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF20483.4 best Flavi_NS5_thumb 184.2 2.50e-54 87.2% 92.7%
D2 medium residues 43-151
PDB
Domain cluster: rep: RNA-dependent_RNA_polymerase__NP_740729__Louping_ill_virus__11086__D71-170
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01728.26 best FtsJ 52.3 9.80e-14 100.0% 62.4%
D3 medium residues 152-234
PDB
Domain cluster: rep: RNA-dependent_RNA_polymerase_NS5__YP_009329957__Saint_Louis_encephalitis_virus__11080__D147-245
D4 medium residues 272-307_385-450_466-487_549-600
PDB
Domain cluster: rep: NS5-like_protein__YP_009179403__Wuhan_flea_virus__1746071__D315-356_368-395_444-456_471-503_597-617
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF00972.26 best Flavi_NS5 93.2 2.10e-26 53.4% 22.8%
PF00972.26 Flavi_NS5 35.3 7.50e-09 29.5% 10.9%
D5 medium residues 308-384_451-465_528-548
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00972.26 best Flavi_NS5 45.8 4.80e-12 69.9% 14.9%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3729234 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.50 37.0 2.72e-01 77.0% 84.3%
D6 medium residues 488-527_601-698
PDB
Domain cluster: rep: RNA-dependent_RNA_polymerase_NS5__YP_009259365__Quang_Binh_virus__643132__D492-530_608-683
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00972.26 best Flavi_NS5 62.4 4.30e-17 63.0% 20.4%