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NS6_protein

Euk-Vir

Sparrow_coronavirus_HKU17

NS6_protein__YP_005352849__Sparrow_coronavirus_HKU17__1159906

Identity

Accession:
YP_005352849 ↗
Protein ID:
NS6_protein
Kingdom:
euk

Quality

86.2 mean pLDDT

Taxonomy

Orthornavirae› Pisuviricota› Pisoniviricetes› Nidovirales› Coronaviridae› Deltacoronavirus› Sparrow_coronavirus_HKU17

TaxID: 1159906

Cluster

View cluster (14 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 23-81
PDB
Domain cluster: rep: NS6_protein__YP_005352884__Common_moorhen_coronavirus_HKU21__1159902__D23-81
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF27996.1 best NS6_deltaCoV 106.5 8.10e-31 100.0% 64.8%
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2cjwA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.59 42.0 3.00e-01 74.6% 70.8%
3rotA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.56 41.0 3.18e-01 78.0% 54.8%
3nl6B01 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.55 42.0 2.99e-01 89.8% 84.8%
3td9A01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.55 42.0 3.01e-01 86.4% 48.7%
1efaA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.54 40.0 3.14e-01 78.0% 58.7%
3s99A01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.54 39.0 3.03e-01 78.0% 56.6%
1npdB01 3.40.50.10860 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Leucine Dehydrogenase, chain A, domain 1 0.54 45.0 3.45e-01 93.2% 70.3%
2f4nA01 3.40.50.10790 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › S-adenosyl-l-methionine hydroxide adenosyltransferase, N-terminal 0.53 42.0 3.31e-01 94.9% 62.8%
6pxcA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.53 41.0 3.55e-01 91.5% 53.8%
5odqE01 3.40.50.700 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NADH:ubiquinone oxidoreductase-like, 20kDa subunit 0.52 34.0 2.61e-01 78.0% 24.5%
2ajtA01 3.40.50.10940 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.52 38.0 2.80e-01 81.4% 48.0%
4c5cA01 3.40.50.20 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.51 33.0 3.01e-01 71.2% 45.2%
4yleA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.51 41.0 3.24e-01 94.9% 72.3%
3c4nA02 3.30.9.10 Alpha Beta › 2-Layer Sandwich › D-Amino Acid Oxidase; Chain A, domain 2 › D-Amino Acid Oxidase, subunit A, domain 2 0.51 44.0 3.47e-01 98.3% 96.8%
3n5lA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.50 33.0 2.67e-01 71.2% 33.1%
ECOD (30)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3958100 327.5.1.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins 0.64 51.0 4.65e-01 89.8% 100.0%
4204908 323.1.1.5 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › Condensation 0.64 49.0 3.39e-01 86.4% 45.9%
5055248 2003.1.1.51 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › DFP 0.62 46.0 3.23e-01 81.4% 52.4%
4964131 2003.1.1.51 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › DFP 0.61 45.0 3.18e-01 81.4% 53.3%
5022884 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.59 47.0 3.80e-01 88.1% 48.7%
4999042 328.5.1.1 ↗ a+b two layers › IF3-like › SirA-like › SirA-like › TusA 0.59 43.0 4.01e-01 78.0% 66.2%
3498759 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.58 45.0 3.08e-01 84.7% 23.9%
3761667 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.57 38.0 3.57e-01 71.2% 96.2%
3935669 4143.1.1.1 ↗ a+b two layers › THUMP domain-like › THUMP domain-like › THUMP domain-like › THUMP 0.56 40.0 3.36e-01 74.6% 60.0%
4933935 2008.1.1.159 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Csa1 0.56 43.0 2.78e-01 84.7% 39.0%
5022727 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 43.0 3.34e-01 89.8% 51.3%
3288180 2007.2.1.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Flavoproteins 0.55 40.0 3.10e-01 81.4% 72.7%
3487379 2007.9.1.6 ↗ a/b three-layered sandwiches › Flavodoxin-like › Toll/Interleukin receptor TIR domain › Toll/Interleukin receptor TIR domain › MAP3K_TRAF_bd+DRHyd-ASK 0.54 39.0 2.92e-01 78.0% 65.5%
3713276 2006.1.6.4 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › Ku_N 0.54 45.0 3.14e-01 96.6% 90.7%
4013630 2003.1.1.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains 0.54 43.0 3.26e-01 94.9% 34.1%
4968479 2003.1.1.51 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › DFP 0.54 43.0 3.07e-01 93.2% 72.2%
4970030 2007.1.2.13 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › Peripla_BP_6 0.53 41.0 3.24e-01 89.8% 91.7%
1945553 2498.1.1.41 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M60 0.53 43.0 2.82e-01 93.2% 18.7%
5008595 2006.1.6.15 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › DUF58 0.53 39.0 2.87e-01 81.4% 65.0%
4191267 323.1.1.5 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › Condensation 0.53 39.0 2.90e-01 84.7% 48.1%
3242647 2006.1.6.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like 0.53 43.0 3.13e-01 96.6% 37.5%
3789331 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.53 41.0 2.68e-01 93.2% 93.8%
3583261 4357.1.1.0 ↗ beta barrels › WWE domain › WWE domain › WWE domain 0.53 39.0 3.85e-01 83.1% 73.8%
4989438 315.1.1.2 ↗ a+b two layers › Tautomerase/MIF-like › Tautomerase/MIF › Tautomerase/MIF › Tautomerase 0.52 36.0 3.61e-01 71.2% 76.3%
4177287 315.1.1.2 ↗ a+b two layers › Tautomerase/MIF-like › Tautomerase/MIF › Tautomerase/MIF › Tautomerase 0.52 35.0 3.54e-01 71.2% 75.0%
4953115 315.1.1.2 ↗ a+b two layers › Tautomerase/MIF-like › Tautomerase/MIF › Tautomerase/MIF › Tautomerase 0.52 35.0 3.55e-01 71.2% 75.0%
4975427 2007.15.1.2 ↗ a/b three-layered sandwiches › Flavodoxin-like › N-deoxyribosyltransferase › N-deoxyribosyltransferase › Nuc_deoxyrib_tr 0.52 40.0 3.20e-01 86.4% 61.5%
3394138 2002.1.1.83 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Amidohydro_1 0.52 42.0 2.73e-01 96.6% 99.7%
4948133 315.1.1.2 ↗ a+b two layers › Tautomerase/MIF-like › Tautomerase/MIF › Tautomerase/MIF › Tautomerase 0.51 35.0 3.40e-01 71.2% 67.7%
4419527 2002.1.1.83 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Amidohydro_1 0.50 41.0 2.68e-01 98.3% 73.8%