NSP1ab

Euk-Vir

Bovine_astrovirus

NSP1ab__YP_009041462__Bovine_astrovirus__1435485

Identity

70.1 mean pLDDT

Orthornavirae› Pisuviricota› Stelpaviricetes› Stellavirales› Astroviridae› Mamastrovirus› Bovine_astrovirus

TaxID: 1435485

View cluster (4 members)

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high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 708-777

PDB

Domain cluster: rep: NSP1a__YP_009041463__Bovine_astrovirus__1435485__D684-783

D2 medium residues 1-73

PDB

D3 medium residues 199-338

PDB

D4 medium residues 391-467

PDB

Domain cluster: rep: ORF1a__YP_009162618__Dromedary_astrovirus__1662272__D428-481

D5 medium residues 468-545

PDB

Domain cluster: rep: ORF1a__YP_009047079__Human_astrovirus_BF34__1518575__D522-618

D6 medium residues 795-832_851-880_908-995_1085-1097

PDB

Domain cluster: rep: putative_non-structural_protein_NS5__NP_776035__Tamana_bat_virus__161675__D298-445

D7 medium residues 881-907_996-1018_1035-1084_1098-1136

PDB

Domain cluster: rep: NIb__YP_006908987__Rose_yellow_mosaic_virus__1048434__D1-17_73-106_202-219_246-320

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00680.26 best	RdRP_1	38.5	8.70e-10	64.0%	19.8%

CATH (5)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
6xxvC00	1.10.132.20	Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor	0.56	27.0	3.02e-01	95.0%	56.8%
2vm6A00	1.10.437.10	Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like	0.56	37.0	3.66e-01	76.3%	63.2%
3oqiA00	3.40.50.11710	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Cyclodipeptide synthase	0.52	45.0	3.94e-01	97.1%	96.8%
1ca1A01	1.10.575.10	Mainly Alpha › Orthogonal Bundle › P1 Nuclease › P1 Nuclease	0.51	37.0	3.07e-01	75.5%	98.0%
1q9cA01	1.10.20.10	Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A	0.51	43.0	4.30e-01	100.0%	89.8%

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3458978	632.15.1.3 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › Staphylococcal complement inhibitor (SCIN) › Staphylococcal complement inhibitor (SCIN) › GAUT_1	0.57	26.0	3.29e-01	94.2%	69.4%
3599284	3914.1.1.0 ↗	alpha bundles › TMEM16 lipid scramblase transmembrane domain › TMEM16 lipid scramblase transmembrane domain › TMEM16 lipid scramblase transmembrane domain	0.51	37.0	2.40e-01	74.8%	22.4%