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NSP2
Euk-VirRotavirus_D_chicken_05V0049_DEU_2005
NSP2__YP_003896053__Rotavirus_D_chicken_05V0049_DEU_2005__884200
Identity
- Accession:
- YP_003896053 ↗
- Protein ID:
- NSP2
- Kingdom:
- euk
Quality
71.2
mean pLDDT
Taxonomy
Orthornavirae›
Duplornaviricota›
Resentoviricetes›
Reovirales›
Sedoreoviridae›
Rotavirus›
Rotavirus_D_chicken/05V0049/DEU/2005
TaxID: 884200
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-145
Domain cluster:
rep: NSP2__YP_002302221__Rotavirus_A__28875__D2-106
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF21067.3 best | Rota_NS35_N | 104.9 | 5.00e-30 | 97.2% | 98.6% |
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2gu0A01 | 3.90.1400.10 | Alpha Beta › Alpha-Beta Complex › Rotavirus NSP2 fragment, N-terminal domain › Rotavirus NSP2 fragment, N-terminal domain | 0.83 | 77.0 | 7.78e-01 | 97.2% | 100.0% |
| 4g0aA01 | 3.90.1400.10 | Alpha Beta › Alpha-Beta Complex › Rotavirus NSP2 fragment, N-terminal domain › Rotavirus NSP2 fragment, N-terminal domain | 0.81 | 76.0 | 7.64e-01 | 98.6% | 100.0% |
| 3if8B02 | 1.20.58.730 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.56 | 33.0 | 3.85e-01 | 77.9% | 83.0% |
| 2epcA01 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.56 | 14.0 | 2.77e-01 | 85.5% | 84.8% |
| 4p16A02 | 1.10.8.1190 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Papain-like viral protease, thumb domain | 0.52 | 33.0 | 3.56e-01 | 98.6% | 74.0% |
| 6ln0A02 | 1.10.8.1190 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Papain-like viral protease, thumb domain | 0.51 | 32.0 | 3.63e-01 | 99.3% | 85.6% |
| 1hh5A00 | 3.90.10.10 | Alpha Beta › Alpha-Beta Complex › Cytochrome C3 › Cytochrome C3 | 0.51 | 23.0 | 3.08e-01 | 81.4% | 83.8% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 161774 | 839.1.1.0 ↗ | a+b complex topology › Rotavirus NSP2 fragment, N-terminal domain › Rotavirus NSP2 fragment, N-terminal domain › Rotavirus NSP2 fragment, N-terminal domain | 0.83 | 76.0 | 7.72e-01 | 95.9% | 100.0% |
| 2784753 | 839.1.1.2 ↗ | a+b complex topology › Rotavirus NSP2 fragment, N-terminal domain › Rotavirus NSP2 fragment, N-terminal domain › Rotavirus NSP2 fragment, N-terminal domain › Rota_NS35_N | 0.81 | 76.0 | 7.66e-01 | 97.9% | 100.0% |
| 85688 | 839.1.1.0 ↗ | a+b complex topology › Rotavirus NSP2 fragment, N-terminal domain › Rotavirus NSP2 fragment, N-terminal domain › Rotavirus NSP2 fragment, N-terminal domain | 0.81 | 75.0 | 7.62e-01 | 97.2% | 100.0% |
| 4958580 | 306.6.1.5 ↗ | a+b two layers › Glucose permease domain IIB-like › PH0987 N-terminal domain-like › PH0987 N-terminal domain-like › DUF2113 | 0.53 | 29.0 | 3.69e-01 | 74.5% | 97.3% |
D2
medium
residues 146-310