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NSP2

Euk-Vir

Rotavirus_I

NSP2__YP_009130670__Rotavirus_I__1637496

Identity

Accession:: YP_009130670 ↗
Protein ID:: NSP2
Kingdom:: euk

Quality

68.5 mean pLDDT

Taxonomy

Orthornavirae› Duplornaviricota› Resentoviricetes› Reovirales› Sedoreoviridae› Rotavirus› Rotavirus_I

TaxID: 1637496

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-77

PDB

D2 medium residues 78-209

PDB

Domain cluster: representative

CATH (3)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3e38A02	2.60.40.3090	Mainly Beta › Sandwich › Immunoglobulin-like ›	0.55	30.0	3.87e-01	87.9%	89.9%
5m7oA03	1.10.8.60	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 ›	0.54	33.0	3.96e-01	72.7%	93.1%
1dgwX00	2.60.120.1450	Mainly Beta › Sandwich › Jelly Rolls ›	0.54	23.0	2.84e-01	91.7%	60.5%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3058745	2484.1.1.97 ↗	mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas9_RuvC	0.53	20.0	3.19e-01	91.7%	97.7%

D3 medium residues 210-301

PDB

Domain cluster: representative

CATH (8)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2r7cA02	3.30.428.20	Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › Rotavirus NSP2 fragment, C-terminal domain	0.70	62.0	5.21e-01	97.8%	82.2%
3e3vA03	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.66	29.0	3.70e-01	90.2%	67.9%
8thmA01	1.20.120.1310	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Carboxysome Shell Carbonic Anhydrase, N-terminal helical domain	0.56	39.0	4.14e-01	82.6%	82.5%
1l9lA00	1.10.225.10	Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like	0.55	42.0	4.59e-01	80.4%	100.0%
2ewtA00	1.10.260.40	Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains	0.52	28.0	3.14e-01	79.3%	66.2%
2elcA01	1.20.970.10	Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C	0.52	32.0	3.64e-01	70.7%	85.1%
2vmaA00	1.20.81.30	Mainly Alpha › Up-down Bundle › Receptor-associated Protein › Type II secretion system (T2SS), domain F	0.51	45.0	4.12e-01	100.0%	86.9%
1tvzA02	3.40.47.10	Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase	0.50	35.0	3.05e-01	71.7%	61.9%

ECOD (9)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3553295	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.59	43.0	3.29e-01	77.2%	54.5%
5007095	5060.2.1.1 ↗	alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF	0.59	51.0	4.52e-01	94.6%	86.2%
4935513	5060.2.1.0 ↗	alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain	0.58	51.0	4.61e-01	100.0%	88.5%
5063352	5060.2.1.1 ↗	alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF	0.58	51.0	4.59e-01	100.0%	88.5%
5010901	4033.1.1.0 ↗	alpha arrays › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like	0.57	45.0	4.35e-01	92.4%	74.3%
5025678	5060.2.1.0 ↗	alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain	0.54	48.0	4.31e-01	100.0%	88.5%
3603607	5060.2.1.1 ↗	alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF	0.54	47.0	4.29e-01	100.0%	88.5%
3431587	2004.1.1.56 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › NB-ARC	0.54	41.0	3.00e-01	81.5%	40.8%
3165055	5060.2.1.1 ↗	alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF	0.50	42.0	3.95e-01	94.6%	89.6%