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NSP
Euk-VirPepper_leafroll_virus
NSP__YP_009927293__Pepper_leafroll_virus__1387160
Identity
- Accession:
- YP_009927293 ↗
- Protein ID:
- NSP
- Kingdom:
- euk
Quality
88.2
mean pLDDT
Taxonomy
Shotokuvirae›
Cressdnaviricota›
Repensiviricetes›
Geplafuvirales›
Geminiviridae›
Begomovirus›
Pepper_leafroll_virus
TaxID: 1387160
Cluster
View cluster (551 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-69_130-178_193-208
Domain cluster:
representative
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00844.25 best | Gemini_coat | 61.1 | 1.60e-16 | 53.0% | 26.2% |
| PF00844.25 | Gemini_coat | 48.1 | 1.50e-12 | 52.2% | 20.9% |
CATH (41)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6f2sH01 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.77 | 74.0 | 6.14e-01 | 100.0% | 93.5% |
| 4aw7A01 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.66 | 38.0 | 4.05e-01 | 97.0% | 63.6% |
| 1s58A00 | 2.170.30.10 | Mainly Beta › Beta Complex › Empty Capsid Viral Protein 2 › Parvovirus coat protein VP1/VP2 | 0.65 | 59.0 | 3.93e-01 | 99.3% | 86.0% |
| 1f8vC00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.61 | 56.0 | 4.25e-01 | 100.0% | 76.2% |
| 4nwvA01 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.61 | 57.0 | 5.06e-01 | 100.0% | 88.6% |
| 1cov100 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.59 | 53.0 | 4.21e-01 | 97.8% | 68.0% |
| 1ng0C00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.59 | 54.0 | 4.55e-01 | 100.0% | 83.9% |
| 2yjlA00 | 2.60.40.2990 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.58 | 30.0 | 3.27e-01 | 88.1% | 57.4% |
| 1opoC01 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.58 | 53.0 | 4.94e-01 | 99.3% | 96.4% |
| 4oq8A00 | 2.60.120.220 | Mainly Beta › Sandwich › Jelly Rolls › Satellite virus coat domain | 0.58 | 50.0 | 4.94e-01 | 100.0% | 87.5% |
| 3gqqA00 | 2.70.50.40 | Mainly Beta › Distorted Sandwich › Coagulation Factor XIII; Chain A, domain 1 › GMP phosphodiesterase, delta subunit | 0.57 | 31.0 | 2.95e-01 | 73.1% | 42.5% |
| 1hx6B01 | 2.70.9.30 | Mainly Beta › Distorted Sandwich › Adenovirus Type 2 Hexon; domain 4 › Viral coat protein p3 | 0.57 | 51.0 | 4.26e-01 | 99.3% | 88.0% |
| 5hdwA00 | 2.60.40.1470 | Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain | 0.56 | 42.0 | 4.27e-01 | 96.3% | 78.6% |
| 1mec100 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.55 | 50.0 | 3.93e-01 | 98.5% | 78.8% |
| 2q7nA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 37.0 | 4.04e-01 | 94.8% | 84.5% |
| 2q3zA04 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 35.0 | 3.97e-01 | 94.0% | 88.5% |
| 6mkbA00 | 2.60.120.40 | Mainly Beta › Sandwich › Jelly Rolls › | 0.55 | 49.0 | 4.67e-01 | 97.8% | 99.4% |
| 5jzgA00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.54 | 48.0 | 4.08e-01 | 97.8% | 72.6% |
| 6mrmC01 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.54 | 48.0 | 4.44e-01 | 96.3% | 94.1% |
| 1s3rA04 | 2.60.40.1430 | Mainly Beta › Sandwich › Immunoglobulin-like › Perfringolysin, domain 4 | 0.54 | 31.0 | 3.35e-01 | 91.0% | 65.8% |
| 5wm1A05 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.54 | 44.0 | 4.68e-01 | 95.5% | 99.1% |
| 3gqcC04 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.53 | 44.0 | 4.67e-01 | 97.8% | 99.2% |
| 2re9A01 | 2.60.120.40 | Mainly Beta › Sandwich › Jelly Rolls › | 0.53 | 47.0 | 4.48e-01 | 95.5% | 100.0% |
| 1va9A00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 36.0 | 3.77e-01 | 99.3% | 77.0% |
| 3vbhC00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.53 | 47.0 | 3.91e-01 | 100.0% | 87.6% |
| 4l9bA02 | 2.60.120.1400 | Mainly Beta › Sandwich › Jelly Rolls › Viral head domain of polysaccharide receptor-binding protein-like | 0.52 | 47.0 | 4.03e-01 | 97.0% | 92.5% |
| 3ufiA02 | 2.60.40.2630 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.52 | 32.0 | 3.37e-01 | 79.9% | 65.6% |
| 7mjrA03 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.52 | 46.0 | 4.65e-01 | 92.5% | 100.0% |
| 5k0uB00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.52 | 47.0 | 3.92e-01 | 100.0% | 87.2% |
| 1alyA00 | 2.60.120.40 | Mainly Beta › Sandwich › Jelly Rolls › | 0.52 | 47.0 | 4.58e-01 | 97.0% | 97.3% |
| 4zchA01 | 2.60.120.40 | Mainly Beta › Sandwich › Jelly Rolls › | 0.52 | 46.0 | 4.67e-01 | 94.0% | 100.0% |
| 4hscX04 | 2.60.40.1430 | Mainly Beta › Sandwich › Immunoglobulin-like › Perfringolysin, domain 4 | 0.52 | 30.0 | 3.33e-01 | 91.0% | 70.0% |
| 4h3wA02 | 2.60.120.1260 | Mainly Beta › Sandwich › Jelly Rolls › | 0.52 | 45.0 | 4.40e-01 | 97.0% | 94.1% |
| 1tnrA00 | 2.60.120.40 | Mainly Beta › Sandwich › Jelly Rolls › | 0.52 | 46.0 | 4.56e-01 | 97.0% | 100.0% |
| 7uzsX03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 37.0 | 3.98e-01 | 97.0% | 87.8% |
| 1pgl100 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.51 | 46.0 | 4.18e-01 | 99.3% | 93.0% |
| 2ox5B00 | 2.60.40.2470 | Mainly Beta › Sandwich › Immunoglobulin-like › SoxY domain | 0.51 | 31.0 | 3.33e-01 | 97.0% | 70.0% |
| 4d7yA00 | 2.60.120.40 | Mainly Beta › Sandwich › Jelly Rolls › | 0.51 | 45.0 | 4.64e-01 | 96.3% | 100.0% |
| 4fixA01 | 3.90.550.60 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › | 0.51 | 35.0 | 2.54e-01 | 98.5% | 23.3% |
| 2b39A10 | 2.60.120.1540 | Mainly Beta › Sandwich › Jelly Rolls › | 0.50 | 40.0 | 4.24e-01 | 99.3% | 98.3% |
| 1dg6A00 | 2.60.120.40 | Mainly Beta › Sandwich › Jelly Rolls › | 0.50 | 46.0 | 4.42e-01 | 97.8% | 100.0% |
ECOD (28)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2841541 | 10.2.1.11 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Gemini_coat | 0.77 | 74.0 | 6.11e-01 | 100.0% | 92.2% |
| 3108819 | 10.2.1.11 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Gemini_coat | 0.77 | 72.0 | 6.04e-01 | 99.3% | 94.9% |
| 4932993 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.60 | 32.0 | 3.64e-01 | 73.1% | 69.5% |
| 5005735 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.59 | 39.0 | 4.52e-01 | 97.0% | 98.9% |
| 2797580 | 10.2.1.0 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) | 0.58 | 50.0 | 4.78e-01 | 100.0% | 79.7% |
| 4015340 | 10.32.1.232 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › DUF4360 | 0.56 | 50.0 | 4.55e-01 | 100.0% | 97.8% |
| 3236419 | 11.1.4.63 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › DUF870 | 0.55 | 32.0 | 3.40e-01 | 88.1% | 63.5% |
| 3241666 | 11.1.4.63 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › DUF870 | 0.54 | 32.0 | 3.39e-01 | 86.6% | 63.3% |
| 4978088 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.54 | 41.0 | 4.41e-01 | 94.8% | 91.3% |
| 3602859 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 35.0 | 4.14e-01 | 94.8% | 97.8% |
| 3262497 | 11.1.1.801 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7035 | 0.54 | 38.0 | 3.79e-01 | 100.0% | 71.1% |
| 4336898 | 11.1.1.254 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › bMG5 | 0.54 | 42.0 | 4.33e-01 | 100.0% | 86.2% |
| 3606028 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.54 | 43.0 | 4.62e-01 | 93.3% | 96.6% |
| 5041017 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 35.0 | 4.02e-01 | 94.8% | 96.7% |
| 3593524 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.53 | 47.0 | 4.15e-01 | 99.3% | 98.5% |
| 3881289 | 10.3.1.1 ↗ | beta sandwiches › jelly-roll › TNF-like › TNF-like › TNF | 0.53 | 49.0 | 4.61e-01 | 98.5% | 93.7% |
| 5039150 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.52 | 42.0 | 4.57e-01 | 96.3% | 99.1% |
| 3451281 | 71.1.1.12 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › DUF620 | 0.52 | 38.0 | 2.93e-01 | 76.1% | 92.3% |
| 1720475 | 10.2.1.25 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Como_SCP | 0.52 | 45.0 | 4.02e-01 | 96.3% | 82.1% |
| 3593920 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.51 | 43.0 | 4.48e-01 | 96.3% | 100.0% |
| 4947556 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 38.0 | 3.67e-01 | 96.3% | 69.3% |
| 3192440 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 36.0 | 3.92e-01 | 100.0% | 90.0% |
| 3788273 | 11.1.1.543 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Vac7 | 0.51 | 45.0 | 4.40e-01 | 97.8% | 87.3% |
| 4581678 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.51 | 36.0 | 3.46e-01 | 85.8% | 62.5% |
| 1555984 | 10.3.1.9 ↗ | beta sandwiches › jelly-roll › TNF-like › TNF-like › Lac_Phage_Head | 0.50 | 46.0 | 3.91e-01 | 100.0% | 92.7% |
| 3227387 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.50 | 32.0 | 3.33e-01 | 76.1% | 66.9% |
| 3805836 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.50 | 42.0 | 4.27e-01 | 90.3% | 89.6% |
| 5005563 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.50 | 32.0 | 3.50e-01 | 96.3% | 78.2% |
D2
medium
residues 70-129_179-192
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00844.25 best | Gemini_coat | 59.5 | 5.10e-16 | 81.1% | 21.3% |
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3rx9A00 | 2.60.40.4150 | Mainly Beta › Sandwich › Immunoglobulin-like › Type VI secretion system, lipoprotein SciN | 0.56 | 47.0 | 3.96e-01 | 93.2% | 57.7% |
| 3tupA02 | 3.30.70.380 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ferrodoxin-fold anticodon-binding domain | 0.55 | 39.0 | 3.62e-01 | 74.3% | 96.9% |
| 2je8A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 41.0 | 3.57e-01 | 93.2% | 54.5% |
| 1al3A01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.52 | 39.0 | 3.59e-01 | 81.1% | 98.0% |
| 3rlsB00 | 2.60.40.1970 | Mainly Beta › Sandwich › Immunoglobulin-like › YEATS domain | 0.52 | 36.0 | 2.96e-01 | 73.0% | 75.0% |
| 3tviA02 | 3.30.2130.10 | Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like | 0.51 | 38.0 | 3.03e-01 | 81.1% | 71.1% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3108819 | 10.2.1.11 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Gemini_coat | 0.77 | 70.0 | 4.91e-01 | 98.6% | 59.1% |
| 3883294 | 304.47.1.1 ↗ | a+b two layers › Alpha-beta plaits › SEA domain › SEA domain › SEA | 0.60 | 44.0 | 3.70e-01 | 78.4% | 96.2% |
| 3395331 | 11.2.1.4 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › Spond_N | 0.57 | 47.0 | 3.49e-01 | 97.3% | 62.7% |
| 4999233 | 304.21.1.1 ↗ | a+b two layers › Alpha-beta plaits › Formylmethanofuran:tetrahydromethanopterin formyltransferase › Formylmethanofuran:tetrahydromethanopterin formyltransferase › FTR | 0.57 | 41.0 | 3.27e-01 | 79.7% | 67.4% |
| 3921499 | 304.47.1.0 ↗ | a+b two layers › Alpha-beta plaits › SEA domain › SEA domain | 0.54 | 39.0 | 3.32e-01 | 78.4% | 97.7% |
| 4931545 | 2.21.1.0 ↗ | beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) | 0.52 | 43.0 | 3.65e-01 | 97.3% | 98.5% |
| 4940861 | 2.21.1.0 ↗ | beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) | 0.51 | 42.0 | 3.58e-01 | 97.3% | 98.5% |
| 4941647 | 2.21.1.0 ↗ | beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) | 0.51 | 42.0 | 3.58e-01 | 97.3% | 98.5% |
| 4932909 | 2.21.1.0 ↗ | beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) | 0.50 | 41.0 | 3.54e-01 | 97.3% | 99.3% |