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NSs
Euk-VirTomato_zonate_spot_virus
NSs__YP_001740043__Tomato_zonate_spot_virus__460926
Identity
- Accession:
- YP_001740043 ↗
- Protein ID:
- NSs
- Kingdom:
- euk
Quality
71.0
mean pLDDT
Taxonomy
Orthornavirae›
Negarnaviricota›
Bunyaviricetes›
Elliovirales›
Tospoviridae›
Orthotospovirus›
Tomato_zonate_spot_virus
TaxID: 460926
Cluster
View cluster (12 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 339-437
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF23017.3 best | WIV_2 | 116.5 | 6.80e-34 | 86.9% | 97.7% |
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1dusA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.60 | 38.0 | 3.03e-01 | 100.0% | 32.5% |
| 2ffgA00 | 3.30.720.20 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Protein of unknown function DUF1797 | 0.57 | 35.0 | 3.85e-01 | 92.9% | 75.0% |
| 3r74B02 | 3.40.50.880 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain | 0.57 | 41.0 | 3.36e-01 | 76.8% | 89.6% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4277039 | 2003.1.5.46 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › MTS | 0.62 | 38.0 | 3.12e-01 | 99.0% | 33.2% |
| 4030945 | 2003.1.5.46 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › MTS | 0.59 | 37.0 | 2.98e-01 | 100.0% | 31.8% |
| 6667 | 4221.1.1.1 ↗ | a+b two layers › YkuJ-like › YkuJ-like › YkuJ-like › DUF1797 | 0.58 | 34.0 | 3.87e-01 | 91.9% | 75.6% |
| 4953526 | 101.21.1.1 ↗ | alpha arrays › HTH › HTH domain in DNA topoisomerase IV alpha subunit › HTH domain in DNA topoisomerase IV alpha subunit › TP6A_N | 0.57 | 41.0 | 3.70e-01 | 92.9% | 54.8% |
| 3483278 | 4106.1.1.0 ↗ | few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack | 0.56 | 41.0 | 3.24e-01 | 76.8% | 96.6% |
| 5050000 | 211.1.1.0 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | 0.55 | 29.0 | 3.61e-01 | 82.8% | 84.7% |
| 3793430 | 274.1.1.0 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits | 0.55 | 34.0 | 3.52e-01 | 76.8% | 65.3% |
| 4382259 | 3926.1.1.1 ↗ | alpha bundles › V-type proton ATPase subunit D › V-type proton ATPase subunit D › V-type proton ATPase subunit D › ATP-synt_D | 0.54 | 39.0 | 3.08e-01 | 75.8% | 47.5% |
| 4937788 | 211.1.1.0 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | 0.53 | 27.0 | 3.45e-01 | 80.8% | 87.3% |
| 3263992 | 2003.1.5.73 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_16 | 0.51 | 38.0 | 2.85e-01 | 99.0% | 32.0% |
| 5000798 | 3926.1.1.1 ↗ | alpha bundles › V-type proton ATPase subunit D › V-type proton ATPase subunit D › V-type proton ATPase subunit D › ATP-synt_D | 0.50 | 39.0 | 3.19e-01 | 82.8% | 51.9% |
| 1 | 1.1.1.3 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › RVP | 0.50 | 37.0 | 3.02e-01 | 78.8% | 99.0% |
| 3952545 | 211.1.1.0 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | 0.50 | 31.0 | 3.41e-01 | 92.9% | 77.2% |
D2
medium
residues 1-47_74-118_217-244
Domain cluster:
rep: NSs__YP_009259255__Tospovirus_kiwifruit_YXW_2014__1857323__D1-47_90-113_213-246
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03231.19 best | Tospov_NS-S_N | 56.7 | 2.90e-15 | 41.7% | 14.5% |
| PF03231.19 | Tospov_NS-S_N | 64.4 | 1.40e-17 | 40.8% | 12.8% |
D3
medium
residues 48-73_119-216_245-332