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NSs
Euk-VirTospovirus_kiwifruit_YXW_2014
NSs__YP_009259255__Tospovirus_kiwifruit_YXW_2014__1857323
Identity
- Accession:
- YP_009259255 ↗
- Protein ID:
- NSs
- Kingdom:
- euk
Quality
73.0
mean pLDDT
Taxonomy
Orthornavirae›
Negarnaviricota›
Bunyaviricetes›
Elliovirales›
Tospoviridae›
Tospovirus_kiwifruit/YXW/2014
TaxID: 1857323
Cluster
View cluster (12 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 339-437
Domain cluster:
rep: NSs__YP_001740043__Tomato_zonate_spot_virus__460926__D339-437
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF23017.3 best | WIV_2 | 111.4 | 2.60e-32 | 86.9% | 97.7% |
D2
medium
residues 1-47_90-113_213-246
Domain cluster:
representative
Pfam (3)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03231.19 best | Tospov_NS-S_N | 59.3 | 4.80e-16 | 45.7% | 14.2% |
| PF03231.19 | Tospov_NS-S_N | 26.8 | 3.80e-06 | 32.4% | 10.0% |
| PF03231.19 | Tospov_NS-S_N | 27.7 | 2.00e-06 | 27.6% | 7.1% |
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2g3aA02 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.59 | 28.0 | 2.86e-01 | 81.0% | 42.9% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2832219 | 2499.2.1.0 ↗ | a/b three-layered sandwiches › Subtilisin-like › Domain III of tail sheath protein Gp18 › Domain III of tail sheath protein Gp18 | 0.56 | 39.0 | 2.74e-01 | 74.3% | 59.9% |
| 3913538 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 30.0 | 3.23e-01 | 78.1% | 61.1% |
| 4933792 | 3012.1.1.0 ↗ | a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain | 0.53 | 34.0 | 3.90e-01 | 93.3% | 86.3% |
| 3354310 | 2484.1.1.13 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T | 0.52 | 36.0 | 2.77e-01 | 71.4% | 50.8% |
| 3194923 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.52 | 37.0 | 2.80e-01 | 74.3% | 59.6% |
| 4416209 | 2484.1.1.43 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Endonuclease_5 | 0.52 | 39.0 | 3.04e-01 | 79.0% | 58.3% |
| 4968598 | 212.1.1.0 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like | 0.51 | 37.0 | 2.96e-01 | 74.3% | 99.5% |
D3
medium
residues 48-89_247-334
D4
medium
residues 114-212