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NTP-binding_domain

Euk-Vir

Bellflower_vein_chlorosis_virus

NTP-binding_domain__YP_009167335__Bellflower_vein_chlorosis_virus__1720595

Identity

Accession:
YP_009167335 ↗
Protein ID:
NTP-binding_domain
Kingdom:
euk

Quality

51.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 313-400
PDB
D2 high residues 410-632
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00910.29 best RNA_helicase 107.0 9.90e-31 48.0% 100.0%
CATH (45)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1v95A01 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.72 36.0 4.97e-01 98.2% 93.1%
3k9cB01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.64 35.0 4.42e-01 96.0% 88.5%
1np6B01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.63 38.0 4.87e-01 95.5% 98.5%
3gybA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.63 33.0 4.25e-01 96.4% 87.8%
2fepA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.63 35.0 4.39e-01 96.0% 89.5%
4rxuA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.62 36.0 4.29e-01 96.0% 83.0%
6ogmD00 3.30.429.10 Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor 0.62 20.0 3.56e-01 76.2% 96.7%
4ycsA00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.62 35.0 4.52e-01 93.3% 96.7%
2hqbA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.62 34.0 4.22e-01 94.2% 87.0%
2vycA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.61 38.0 4.72e-01 98.2% 98.6%
3n75A01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.61 36.0 4.51e-01 97.8% 97.7%
7mjzA01 3.40.50.12160 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Methylthiotransferase, N-terminal domain 0.61 33.0 4.22e-01 94.2% 91.8%
4fe7A01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.61 31.0 3.99e-01 96.0% 84.8%
1w4bA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.60 44.0 4.40e-01 90.1% 72.6%
2h0aA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.60 30.0 3.94e-01 96.0% 89.3%
3ksmA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.60 34.0 4.27e-01 96.0% 94.4%
1ba2A01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.60 33.0 4.19e-01 96.0% 92.8%
3nbmA00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.59 29.0 4.08e-01 93.7% 98.1%
6q2eA01 3.40.50.11840 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Diphthamide synthesis DPH1/DPH2 domain 1 0.59 21.0 3.43e-01 86.5% 85.1%
1gudA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.58 34.0 4.17e-01 97.3% 91.4%
3tauA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.58 34.0 4.31e-01 100.0% 97.0%
1u0tB01 3.40.50.10330 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Probable inorganic polyphosphate/atp-NAD kinase; domain 1 0.57 28.0 3.46e-01 96.0% 71.2%
8gjaD01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.57 49.0 4.61e-01 90.6% 86.7%
8a57D01 3.40.50.11060 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › GTPase HflX, N-terminal domain 0.56 25.0 3.65e-01 91.0% 92.2%
4a8jB00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.55 47.0 4.80e-01 90.1% 90.0%
4kqcA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.55 33.0 3.75e-01 96.0% 78.6%
5b3kA00 3.40.50.360 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain 0.55 37.0 4.37e-01 93.7% 99.3%
4h2dA00 3.40.50.360 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain 0.55 38.0 4.47e-01 96.9% 99.4%
2cvhA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.55 46.0 4.73e-01 89.7% 91.6%
5swvC02 3.40.50.10860 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Leucine Dehydrogenase, chain A, domain 1 0.55 31.0 3.79e-01 95.5% 87.5%
8ouzD01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.54 47.0 4.70e-01 90.6% 92.1%
1m8pA03 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.54 42.0 4.56e-01 96.4% 95.7%
3jzmA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.54 46.0 4.44e-01 89.2% 80.2%
3kb2A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.54 40.0 4.55e-01 95.5% 99.4%
1e9rD01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.54 45.0 4.06e-01 88.3% 80.1%
4tl8F00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.53 43.0 4.48e-01 90.6% 89.2%
2qu7A02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.53 30.0 3.69e-01 91.0% 87.0%
1akqA00 3.40.50.360 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain 0.53 35.0 4.10e-01 94.6% 98.6%
1ixcA02 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.52 24.0 3.42e-01 92.8% 92.0%
1zwkA00 3.40.50.360 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain 0.52 38.0 4.30e-01 95.5% 98.8%
5vegB00 3.40.50.360 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain 0.52 34.0 4.05e-01 96.9% 98.0%
2o20A02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.52 30.0 3.77e-01 96.0% 92.0%
2p2sA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.52 32.0 3.90e-01 95.5% 97.1%
3vkhB07 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 35.0 3.73e-01 87.4% 80.4%
2panA02 3.40.50.1220 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › TPP-binding domain 0.50 33.0 3.69e-01 96.0% 85.6%
ECOD (52)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2392267 2004.1.1.55 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › RNA_helicase 0.77 66.0 6.93e-01 100.0% 96.5%
2897795 2004.1.1.55 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › RNA_helicase 0.76 56.0 6.31e-01 99.1% 95.4%
4812297 2004.1.1.55 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › RNA_helicase 0.76 62.0 6.72e-01 93.3% 97.4%
4188863 2007.1.4.3 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Phosphofructokinase N-terminal domain › NAD_kinase 0.62 29.0 3.97e-01 92.4% 88.6%
2774886 2007.1.3.5 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › OKR_DC_1_N 0.61 36.0 4.47e-01 98.2% 93.4%
4307486 2007.1.4.3 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Phosphofructokinase N-terminal domain › NAD_kinase 0.61 31.0 4.12e-01 95.5% 93.6%
3759530 148.1.3.208 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_NAV1 0.59 43.0 3.99e-01 74.9% 67.3%
3876993 2004.1.1.239 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SLFN-g3_helicase 0.58 40.0 4.33e-01 86.5% 81.6%
3401822 2004.1.1.162 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rad51 0.58 49.0 4.61e-01 88.8% 81.1%
3264373 2004.1.1.162 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rad51 0.58 49.0 4.49e-01 89.2% 87.5%
3949958 2007.1.2.11 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › Peripla_BP_4 0.58 33.0 4.01e-01 95.5% 84.8%
3801049 148.1.3.208 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_NAV1 0.58 42.0 3.88e-01 74.9% 63.2%
4368035 2007.2.1.0 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Flavoproteins 0.57 38.0 4.42e-01 100.0% 93.1%
3822782 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.57 49.0 4.25e-01 89.2% 84.3%
5079460 2007.2.1.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Flavoproteins › Flavodoxin_1 0.57 38.0 4.50e-01 96.9% 98.7%
4031556 2004.1.1.417 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran, AAA_21 0.57 43.0 4.43e-01 76.7% 87.6%
5045711 2007.2.1.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Flavoproteins › Flavodoxin_1 0.57 37.0 4.37e-01 96.4% 96.0%
3637814 2004.1.1.128 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › PAXNEB 0.57 48.0 4.40e-01 89.2% 85.9%
3414081 2004.1.1.128 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › PAXNEB 0.57 48.0 4.50e-01 89.2% 86.3%
3740853 2004.1.1.128 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › PAXNEB 0.56 48.0 4.47e-01 89.2% 85.8%
4010630 2004.1.1.10 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATP-synt_ab 0.56 49.0 3.96e-01 93.3% 58.4%
5034215 2004.1.1.162 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rad51 0.56 45.0 4.47e-01 87.4% 80.9%
4021183 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.56 47.0 4.38e-01 89.2% 86.9%
3941347 2004.1.1.163 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › KTI12 0.56 43.0 4.83e-01 93.7% 99.4%
4542132 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.56 37.0 4.19e-01 87.9% 85.7%
3387359 2004.1.1.10 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATP-synt_ab 0.55 44.0 4.06e-01 82.5% 72.1%
3980280 2004.1.1.10 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATP-synt_ab 0.55 44.0 4.12e-01 82.5% 75.9%
3838354 2004.1.1.63 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › FtsK_SpoIIIE 0.55 46.0 3.69e-01 88.3% 75.8%
4927018 2004.1.1.146 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase 0.55 46.0 4.51e-01 89.2% 80.4%
5040728 2004.1.1.146 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase 0.55 46.0 4.62e-01 89.2% 86.1%
3627520 2007.2.1.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Flavoproteins › Flavodoxin_1 0.55 38.0 3.99e-01 96.9% 77.0%
3335525 2004.1.1.10 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATP-synt_ab 0.55 35.0 3.52e-01 83.0% 61.7%
4943410 2004.1.1.146 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase 0.55 47.0 4.62e-01 89.7% 88.5%
5045504 2004.1.1.146 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase 0.54 46.0 4.56e-01 89.7% 89.2%
4954581 2006.1.3.0 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain 0.54 28.0 3.71e-01 94.6% 94.5%
4159564 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.54 45.0 4.62e-01 91.0% 89.3%
4981535 2007.2.1.6 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Flavoproteins › Flavodoxin_5 0.54 35.0 4.19e-01 94.2% 98.6%
3786335 2004.1.1.128 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › PAXNEB 0.54 46.0 4.20e-01 89.2% 81.4%
5040727 2004.1.1.146 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase 0.54 46.0 4.49e-01 89.7% 86.1%
4941644 2004.1.1.146 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase 0.54 46.0 4.58e-01 89.2% 92.0%
4957366 2007.2.1.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Flavoproteins › Flavodoxin_1 0.54 38.0 4.00e-01 96.4% 80.5%
5078041 2004.1.1.161 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › TmcA_N 0.53 41.0 4.34e-01 81.2% 88.0%
4995122 2004.1.1.146 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase 0.53 46.0 4.59e-01 90.1% 91.1%
5003746 2004.1.1.146 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase 0.53 45.0 4.52e-01 90.1% 88.7%
5069609 2007.2.1.0 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Flavoproteins 0.53 34.0 4.11e-01 93.3% 98.6%
4977382 2004.1.1.146 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase 0.53 45.0 4.46e-01 90.1% 90.6%
3929132 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.53 35.0 4.14e-01 96.4% 98.7%
3817892 2007.9.1.1 a/b three-layered sandwiches › Flavodoxin-like › Toll/Interleukin receptor TIR domain › Toll/Interleukin receptor TIR domain › TIR 0.53 27.0 3.34e-01 75.3% 78.5%
4995611 2007.1.3.0 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like 0.52 35.0 3.90e-01 95.1% 85.9%
3708170 2007.1.16.1 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Iron-sulphur enzyme Dph2 › Diphthamide_syn 0.52 31.0 3.66e-01 99.6% 85.3%
4473494 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.51 38.0 3.55e-01 76.7% 90.2%
5033590 2007.1.3.0 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like 0.51 34.0 3.78e-01 94.2% 84.7%
D3 high residues 883-1011
PDB
D4 medium residues 1-53
PDB
D5 medium residues 54-137
PDB
D6 medium residues 138-194
PDB
D7 medium residues 215-254_277-301
PDB
D8 medium residues 665-797
PDB