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NTPase,_DNA_primase

Euk-Vir

Eptesipox_virus

NTPase,_DNA_primase__YP_009408038__Eptesipox_virus__1329402

Identity

Accession:: YP_009408038 ↗
Protein ID:: NTPase,_DNA_primase
Kingdom:: euk

Quality

87.7 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Pokkesviricetes› Chitovirales› Poxviridae› Vespertilionpoxvirus› Eptesipox_virus

TaxID: 1329402

Cluster

View cluster (30 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 10-229

PDB

Domain cluster: representative

CATH (9)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2atzA00	3.90.920.20	Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › HP0184-like	0.67	49.0	5.40e-01	94.5%	92.6%
2f4lA03	3.10.28.20	Alpha Beta › Roll › Endonuclease I-creI › Acetamidase/Formamidase-like domains	0.65	25.0	3.95e-01	76.8%	92.5%
1r89A03	3.30.70.590	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Poly(A) polymerase predicted RNA binding domain	0.65	39.0	4.91e-01	77.7%	98.5%
4fprB00	3.30.70.2910	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.63	35.0	4.50e-01	70.5%	92.2%
4bbyA05	3.30.300.330	Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 ›	0.63	33.0	4.48e-01	72.7%	100.0%
5wm1A02	3.30.70.270	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain	0.63	30.0	4.07e-01	80.9%	88.1%
1s7hA02	3.30.70.930	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.58	25.0	3.73e-01	70.0%	100.0%
1bwvA01	3.30.70.150	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RuBisCO large subunit, N-terminal domain	0.57	32.0	4.00e-01	74.5%	90.6%
4kyzA00	3.30.70.600	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10	0.53	36.0	4.10e-01	92.3%	91.6%

ECOD (16)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3677440	862.1.1.11 ↗	a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › AEP_C962R	0.75	71.0	6.79e-01	99.1%	100.0%
4030726	862.1.1.0 ↗	a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain	0.73	67.0	6.03e-01	96.4%	94.5%
3338139	11.1.1.792 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ALE2_N	0.67	35.0	4.66e-01	70.5%	93.9%
1124197	304.141.1.1 ↗	a+b two layers › Alpha-beta plaits › Avirulence Effector AvrLm4-7 › Avirulence Effector AvrLm4-7 › AvrLm4-7	0.63	35.0	4.47e-01	70.5%	90.8%
1107972	304.26.1.2 ↗	a+b two layers › Alpha-beta plaits › MTH1187/YkoF-like › MTH1187/YkoF-like › Ykof	0.61	27.0	3.76e-01	70.5%	86.7%
3181986	304.4.1.0 ↗	a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel	0.58	32.0	3.94e-01	70.0%	82.9%
3724729	304.4.1.0 ↗	a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel	0.57	35.0	4.29e-01	89.5%	100.0%
5044656	304.4.1.0 ↗	a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel	0.55	31.0	3.94e-01	97.3%	93.6%
3845197	304.49.1.1 ↗	a+b two layers › Alpha-beta plaits › TRADD, N-terminal domain/Dystroglycan, domain 2 › TRADD, N-terminal domain/Dystroglycan, domain 2 › TRADD_N	0.55	35.0	4.17e-01	70.5%	92.0%
3595511	304.20.1.0 ↗	a+b two layers › Alpha-beta plaits › PAP/Archaeal CCA-adding enzyme, C-terminal domain › PAP/Archaeal CCA-adding enzyme, C-terminal domain	0.55	37.0	4.33e-01	77.7%	97.4%
4930192	304.20.1.4 ↗	a+b two layers › Alpha-beta plaits › PAP/Archaeal CCA-adding enzyme, C-terminal domain › PAP/Archaeal CCA-adding enzyme, C-terminal domain › CAA_C	0.54	39.0	4.33e-01	73.2%	100.0%
5031633	304.8.1.118 ↗	a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › TruB_C_2	0.54	30.0	3.55e-01	73.2%	76.7%
5036917	304.102.1.13 ↗	a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_C_2	0.54	32.0	3.74e-01	73.6%	82.7%
5000048	304.20.1.4 ↗	a+b two layers › Alpha-beta plaits › PAP/Archaeal CCA-adding enzyme, C-terminal domain › PAP/Archaeal CCA-adding enzyme, C-terminal domain › CAA_C	0.51	41.0	4.44e-01	89.1%	98.4%
3605458	309.1.1.16 ↗	a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › LuxS/MPP-like metallohydrolase › Peptidase_M16, Peptidase_M16_C, M16C_assoc, PreP_C	0.50	43.0	2.79e-01	90.5%	42.9%
3600554	304.48.1.0 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like	0.50	33.0	3.49e-01	87.3%	72.5%

D2 high residues 230-320

PDB

Domain cluster: rep: NTPase,_DNA_primase__YP_008003627__Mythimna_separata_entomopoxvirus_L__1293572__D258-347

D3 high residues 326-436

PDB

Domain cluster: rep: NTPase__YP_784303__Nile_crocodilepox_virus__1285600__D325-405

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF08706.17 best	D5_N	55.4	1.20e-14	96.4%	77.5%

D4 high residues 696-783

PDB

Domain cluster: rep: D5-like_helicase-primase__YP_009162463__Salmon_gill_poxvirus__1680908__D732-817

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03288.23 best	Pox_D5	51.8	1.30e-13	100.0%	89.5%

D5 medium residues 482-531_553-564_604-689

PDB

Domain cluster: rep: MN062720.1__QDP45567.1__SEA_FUZZBUSTER_83__00083__D568-722_747-764

D6 medium residues 532-552_565-603

PDB

Domain cluster: representative

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1svmA03	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.60	48.0	3.80e-01	100.0%	51.0%
5yvrA01	3.40.50.1970	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold ›	0.52	43.0	3.12e-01	98.3%	75.1%