←Back to structures
NTPase_DNA_primase
Euk-VirWestern_grey_kangaroopox_virus
NTPase_DNA_primase__YP_010085218__Western_grey_kangaroopox_virus__1566307
Identity
- Accession:
- YP_010085218 ↗
- Protein ID:
- NTPase_DNA_primase
- Kingdom:
- euk
Quality
74.9
mean pLDDT
Taxonomy
Bamfordvirae›
Nucleocytoviricota›
Pokkesviricetes›
Chitovirales›
Poxviridae›
Macropopoxvirus›
Western_grey_kangaroopox_virus
TaxID: 1566307
Cluster
View cluster (30 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 52-228
Domain cluster:
rep: NTPase,_DNA_primase__YP_009408038__Eptesipox_virus__1329402__D10-229
D2
high
residues 247-323
D3
high
residues 697-787
D4
medium
residues 1-51
D5
medium
residues 355-408
Domain cluster:
representative
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4uw9A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.62 | 51.0 | 4.59e-01 | 100.0% | 72.3% |
| 2aj6A00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.59 | 48.0 | 3.82e-01 | 94.4% | 43.3% |
| 1txjA00 | 2.170.150.10 | Mainly Beta › Beta Complex › Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A › Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A | 0.57 | 43.0 | 3.26e-01 | 88.9% | 48.4% |
| 5c8gB00 | 1.20.920.10 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like | 0.57 | 41.0 | 3.34e-01 | 81.5% | 98.3% |
| 2xzmP00 | 3.30.70.3370 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 38.0 | 2.87e-01 | 88.9% | 26.4% |
| 2cqnA00 | 1.10.10.440 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › FF domain | 0.56 | 45.0 | 4.11e-01 | 94.4% | 64.9% |
| 2nn4A00 | 1.10.287.760 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YqgQ-like | 0.54 | 40.0 | 3.79e-01 | 81.5% | 67.7% |
| 3wgtA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.54 | 42.0 | 2.94e-01 | 85.2% | 52.5% |
| 3t5qG01 | 1.10.150.550 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Arenavirus nucleocapsid protein, head domain | 0.53 | 37.0 | 3.05e-01 | 74.1% | 39.4% |
| 6z01B01 | 1.10.10.41 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Yeast DNA topoisomerase - domain 1 | 0.53 | 42.0 | 3.81e-01 | 92.6% | 65.4% |
| 1h72C02 | 3.30.70.890 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain | 0.53 | 44.0 | 3.39e-01 | 100.0% | 74.1% |
| 1whuA00 | 1.10.10.400 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Polyribonucleotide nucleotidyltransferase, RNA-binding domain | 0.52 | 45.0 | 3.69e-01 | 100.0% | 60.6% |
| 2rn7A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 37.0 | 3.48e-01 | 100.0% | 63.6% |
| 2k19A00 | 1.20.1440.140 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › | 0.50 | 40.0 | 3.47e-01 | 98.1% | 92.9% |
| 1ea0B03 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.50 | 43.0 | 2.58e-01 | 96.3% | 34.6% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3791227 | 4009.1.1.0 ↗ | alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins | 0.63 | 43.0 | 3.84e-01 | 79.6% | 50.0% |
| 3910253 | 216.1.1.4 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › RWD | 0.57 | 42.0 | 3.33e-01 | 77.8% | 65.7% |
| 3953810 | 101.1.1.5 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › TetR_N | 0.56 | 46.0 | 4.16e-01 | 100.0% | 66.7% |
| 3279590 | 876.1.1.0 ↗ | a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin | 0.55 | 35.0 | 2.75e-01 | 88.9% | 28.0% |
| 3848780 | 835.1.1.1 ↗ | a+b complex topology › Proguanylin › Proguanylin › Proguanylin › Guanylin | 0.52 | 42.0 | 3.68e-01 | 100.0% | 70.5% |
| 4241531 | 101.1.3.1 ↗ | alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE | 0.50 | 34.0 | 3.17e-01 | 72.2% | 70.0% |
| 168175 | 633.2.1.1 ↗ | alpha bundles › Bromodomain-like › Carnobacteriocin B2 immunity protein › Carnobacteriocin B2 immunity protein › EntA_Immun | 0.50 | 40.0 | 3.47e-01 | 98.1% | 92.9% |
D6
medium
residues 503-695
Domain cluster:
rep: MN062720.1__QDP45567.1__SEA_FUZZBUSTER_83__00083__D568-722_747-764