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NTPase_helicase

Euk-Vir

Mythimna_separata_entomopoxvirus_L

NTPase_helicase__YP_008003614__Mythimna_separata_entomopoxvirus_L__1293572

Identity

Accession:
YP_008003614 ↗
Protein ID:
NTPase_helicase
Kingdom:
euk

Quality

70.5 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Pokkesviricetes› Chitovirales› Poxviridae› Betaentomopoxvirus› Mythimna_separata_entomopoxvirus_'L'

TaxID: 1293572

Cluster

View cluster (5 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 12-74
PDB
Domain cluster: representative
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7yuiB01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.65 57.0 5.13e-01 100.0% 78.4%
1wimA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.65 55.0 4.95e-01 100.0% 77.7%
3floB00 1.10.3200.20 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af0941 › DNA Polymerase alpha, zinc finger 0.64 52.0 3.82e-01 92.1% 86.1%
4qiwB04 3.90.1110.10 Alpha Beta › Alpha-Beta Complex › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; domain 3 › RNA polymerase Rpb2, domain 2 0.62 43.0 3.23e-01 73.0% 72.4%
1xutA01 4.10.1290.10 Few Secondary Structures › Irregular › Tumor necrosis factor receptor fold › Tumor necrosis factor receptor superfamily 0.61 35.0 4.12e-01 74.6% 100.0%
4q28A00 3.30.160.780 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.58 34.0 2.83e-01 74.6% 31.8%
2f9iD00 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.58 50.0 3.33e-01 96.8% 95.7%
3aslA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.58 36.0 3.53e-01 95.2% 58.8%
1dgfA03 1.20.1370.60 Mainly Alpha › Up-down Bundle › Hemocyanin, N-terminal domain › 0.57 47.0 3.97e-01 96.8% 98.2%
5xfoA02 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.56 30.0 3.21e-01 84.1% 58.9%
4o8sA02 1.20.58.1790 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › JHP933, helical tail domain 0.54 43.0 3.74e-01 93.7% 78.5%
2d8sA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.53 41.0 3.86e-01 87.3% 68.8%
1l1lA01 3.20.70.20 Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › 0.53 41.0 2.50e-01 90.5% 27.4%
2xzm901 6.20.50.180 Special › Other non-globular › N-terminal domain of TfIIb › 0.53 36.0 3.55e-01 77.8% 63.9%
2xppA00 1.20.930.10 Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 0.52 44.0 3.54e-01 100.0% 75.9%
1lnwF01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 40.0 3.32e-01 88.9% 51.6%
3ndzA00 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.51 41.0 2.65e-01 93.7% 59.4%
6h0nB00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.51 41.0 2.64e-01 95.2% 46.5%
2doaA00 1.10.10.2670 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › E3 ubiquitin-protein ligase 0.51 43.0 3.74e-01 100.0% 90.4%
1ltxR02 3.30.519.10 Alpha Beta › 2-Layer Sandwich › Guanine Nucleotide Dissociation Inhibitor; domain 2 › Guanine Nucleotide Dissociation Inhibitor, domain 2 0.50 41.0 3.08e-01 96.8% 60.1%
ECOD (34)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3461850 150.1.1.88 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › PHD_Oberon 0.74 58.0 4.24e-01 84.1% 55.2%
3829406 601.28.1.2 ↗ alpha bundles › Four-helical up-and-down bundle › VPS28 C-terminal domain-like › VPS28 C-terminal domain-like › PHD_Oberon 0.74 58.0 4.40e-01 87.3% 54.2%
3299867 138.1.1.19 ↗ alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › PHD_Oberon 0.72 57.0 4.20e-01 85.7% 54.5%
3664655 601.28.1.2 ↗ alpha bundles › Four-helical up-and-down bundle › VPS28 C-terminal domain-like › VPS28 C-terminal domain-like › PHD_Oberon 0.72 57.0 4.30e-01 85.7% 60.0%
3723251 375.10.1.1 ↗ few secondary structure elements › Rubredoxin-like › Zinc finger domain of DNA polymerase-alpha › Zinc finger domain of DNA polymerase-alpha › zf-DNA_Pol 0.69 47.0 4.56e-01 71.4% 78.6%
5005300 375.10.1.0 ↗ few secondary structure elements › Rubredoxin-like › Zinc finger domain of DNA polymerase-alpha › Zinc finger domain of DNA polymerase-alpha 0.66 46.0 4.98e-01 73.0% 98.0%
4469728 2486.1.1.3 ↗ a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › Carboxyl_trans 0.60 53.0 3.49e-01 98.4% 96.2%
3210561 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.58 37.0 4.03e-01 92.1% 80.0%
5052849 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.58 41.0 4.20e-01 74.6% 95.0%
5064846 2004.1.1.41 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ADK 0.56 45.0 3.22e-01 96.8% 28.9%
5046185 2004.1.1.194 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C_2 0.55 44.0 2.67e-01 92.1% 12.0%
4883913 4028.1.1.1 ↗ beta barrels › Barrel domain in heme-dependent catalases › Barrel domain in heme-dependent catalases › Barrel domain in heme-dependent catalases › Catalase 0.55 38.0 3.96e-01 98.4% 82.1%
5077820 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.54 38.0 3.66e-01 73.0% 100.0%
3604599 182.1.3.0 ↗ alpha complex topology › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain-related › PriX 0.54 42.0 3.74e-01 90.5% 80.0%
3201162 377.1.1.5 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM 0.53 30.0 2.85e-01 71.4% 46.7%
None — 0.53 45.0 3.16e-01 96.8% 35.8%
5035395 101.1.2.31 ↗ alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.53 40.0 3.10e-01 88.9% 40.6%
5023773 101.1.2.31 ↗ alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.52 43.0 3.29e-01 100.0% 41.1%
4456198 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.52 44.0 3.28e-01 100.0% 40.5%
4645846 375.1.1.179 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha 0.52 42.0 3.18e-01 95.2% 41.8%
5042462 101.1.2.31 ↗ alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.51 41.0 3.18e-01 95.2% 40.6%
4466102 101.1.2.31 ↗ alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.51 41.0 3.14e-01 95.2% 41.8%
4646072 101.1.2.31 ↗ alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.51 42.0 3.24e-01 100.0% 41.2%
4241167 375.1.1.179 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha 0.51 40.0 3.07e-01 93.7% 45.3%
5028348 101.1.2.31 ↗ alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.51 41.0 3.02e-01 95.2% 34.9%
4344487 375.1.1.179 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha 0.51 40.0 3.12e-01 95.2% 40.6%
5031648 101.1.2.31 ↗ alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.51 41.0 3.22e-01 100.0% 40.0%
4239635 101.1.2.31 ↗ alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.50 41.0 3.23e-01 100.0% 40.0%
4507638 101.1.2.31 ↗ alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.50 40.0 3.12e-01 95.2% 40.6%
4403519 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.50 40.0 3.05e-01 93.7% 37.6%
5080684 101.1.2.31 ↗ alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.50 40.0 3.17e-01 95.2% 42.6%
3347814 101.1.2.462 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF7647 0.50 39.0 2.45e-01 88.9% 15.5%
4970576 375.1.1.179 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha 0.50 40.0 3.04e-01 95.2% 38.3%
4947925 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.50 40.0 3.12e-01 95.2% 41.7%
D2 high residues 631-862
PDB
Domain cluster: rep: IMGVR_UViG_3300026211_000011-3300026211-Ga0208132_10019531__D46-252
D3 medium residues 113-198
PDB
D4 medium residues 237-330
PDB
D5 medium residues 359-534
PDB
Domain cluster: rep: MK064563__AZI75768.1__SBFV2-gp01__00001__D223-383
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF00176.30 best SNF2-rel_dom 31.0 2.00e-07 92.0% 41.0%
PF04851.22 ResIII 36.3 7.20e-09 90.9% 81.1%
D6 medium residues 535-630
PDB
Domain cluster: rep: NTPase_helicase__YP_008004202__Choristoneura_biennis_entomopoxvirus__10288__D537-630