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NTPase_helicase
Euk-VirEpizootic_haematopoietic_necrosis_virus
NTPase_helicase__YP_009182007__Epizootic_haematopoietic_necrosis_virus__100217
Identity
- Accession:
- YP_009182007 ↗
- Protein ID:
- NTPase_helicase
- Kingdom:
- euk
Quality
74.9
mean pLDDT
Taxonomy
Bamfordvirae›
Nucleocytoviricota›
Megaviricetes›
Pimascovirales›
Iridoviridae›
Ranavirus›
Epizootic_haematopoietic_necrosis_virus
TaxID: 100217
Cluster
View cluster (26 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 602-675
D2
high
residues 702-787
Domain cluster:
representative
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 8gpsA01 | 1.25.60.10 | Mainly Alpha › Alpha Horseshoe › MgtE N-terminal fold › MgtE N-terminal domain-like | 0.65 | 45.0 | 4.21e-01 | 93.0% | 58.1% |
| 2dpmA02 | 1.10.1020.10 | Mainly Alpha › Orthogonal Bundle › Adenine-specific Methyltransferase; domain 2 › Adenine-specific Methyltransferase, Domain 2 | 0.60 | 43.0 | 4.07e-01 | 74.4% | 63.1% |
| 1k8kG00 | 1.25.40.190 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Actin-related protein 2/3 complex subunit 5 | 0.59 | 52.0 | 4.47e-01 | 98.8% | 77.7% |
| 1nxcA00 | 1.50.10.10 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › | 0.57 | 49.0 | 3.13e-01 | 97.7% | 67.2% |
| 3ut4A00 | 1.25.40.750 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Domain of unknown function DUF5071 | 0.57 | 42.0 | 3.75e-01 | 94.2% | 53.9% |
| 4by6B00 | 2.30.30.1020 | Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain | 0.57 | 49.0 | 4.04e-01 | 100.0% | 58.4% |
| 1d8cA03 | 1.20.1220.12 | Mainly Alpha › Up-down Bundle › Malate Synthase G; Chain: A; Domain 4 › Malate synthase, domain III | 0.56 | 42.0 | 3.65e-01 | 79.1% | 88.1% |
| 4c0dC00 | 2.30.30.1020 | Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain | 0.56 | 48.0 | 4.16e-01 | 98.8% | 61.3% |
| 3i45A01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.52 | 39.0 | 3.01e-01 | 77.9% | 87.9% |
| 4rv5A01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.52 | 38.0 | 2.94e-01 | 79.1% | 86.1% |
| 4q6bA01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.52 | 39.0 | 2.98e-01 | 80.2% | 88.6% |
| 3zi1A01 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.51 | 36.0 | 3.20e-01 | 74.4% | 83.7% |
| 4citA00 | 1.10.606.20 | Mainly Alpha › Orthogonal Bundle › Vanadium-containing Chloroperoxidase; domain 2 › | 0.51 | 37.0 | 2.39e-01 | 75.6% | 56.1% |
| 1hzfA00 | 1.50.10.20 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › | 0.50 | 44.0 | 3.09e-01 | 100.0% | 60.9% |
ECOD (17)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4055950 | 3018.1.1.0 ↗ | a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like | 0.67 | 33.0 | 3.64e-01 | 70.9% | 58.6% |
| 3277330 | 210.1.2.0 ↗ | a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain | 0.66 | 37.0 | 4.12e-01 | 75.6% | 68.6% |
| 3837941 | 2003.1.5.20 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › MethyltransfD12 | 0.64 | 43.0 | 3.45e-01 | 74.4% | 33.9% |
| 3929678 | 109.54.1.1 ↗ | alpha superhelices › Repetitive alpha hairpins › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 › Utp12 | 0.62 | 50.0 | 4.60e-01 | 93.0% | 67.0% |
| 3941309 | 109.8.1.1 ↗ | alpha superhelices › Repetitive alpha hairpins › Arp2/3 complex 16 KDa subunit ARPC5 › Arp2/3 complex 16 KDa subunit ARPC5 › P16-Arc | 0.59 | 53.0 | 4.42e-01 | 98.8% | 74.3% |
| 60141 | 109.8.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Arp2/3 complex 16 KDa subunit ARPC5 › Arp2/3 complex 16 KDa subunit ARPC5 | 0.58 | 52.0 | 4.71e-01 | 98.8% | 79.3% |
| 4881507 | 109.8.1.1 ↗ | alpha superhelices › Repetitive alpha hairpins › Arp2/3 complex 16 KDa subunit ARPC5 › Arp2/3 complex 16 KDa subunit ARPC5 › P16-Arc | 0.58 | 51.0 | 4.32e-01 | 98.8% | 74.5% |
| 4804032 | 4963.1.2.1 ↗ | alpha complex topology › N-terminal additional helical subdomain in reovirus polymerase lambda3 › N-terminal additional helical subdomain in reovirus polymerase lambda3 › N-terminal domain in vesicular stomatitis virus RNA polymerase L › Mononeg_RNA_pol | 0.58 | 42.0 | 3.16e-01 | 79.1% | 30.0% |
| 5029408 | 7064.1.1.1 ↗ | alpha bundles › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › VIT1 | 0.57 | 41.0 | 3.46e-01 | 75.6% | 91.3% |
| 3290606 | 109.2.1.16 ↗ | alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › LANC_like | 0.56 | 48.0 | 3.14e-01 | 98.8% | 40.2% |
| 4502522 | 109.2.1.9 ↗ | alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › Glyco_hydro_48 | 0.56 | 48.0 | 2.95e-01 | 100.0% | 60.9% |
| 3788184 | 6155.1.1.0 ↗ | alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter | 0.55 | 46.0 | 3.88e-01 | 89.5% | 92.1% |
| 3723542 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.55 | 41.0 | 3.66e-01 | 79.1% | 73.2% |
| 3192289 | 7064.1.1.1 ↗ | alpha bundles › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › VIT1 | 0.55 | 39.0 | 3.18e-01 | 76.7% | 91.4% |
| 3280009 | 109.2.1.16 ↗ | alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › LANC_like | 0.55 | 46.0 | 3.06e-01 | 95.3% | 55.6% |
| 3529114 | 109.2.1.24 ↗ | alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › TED_complement | 0.50 | 42.0 | 2.93e-01 | 97.7% | 57.4% |
| 3259134 | 109.2.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid | 0.50 | 42.0 | 2.97e-01 | 96.5% | 42.7% |
D3
high
residues 809-933
D4
medium
residues 282-306_377-539
Domain cluster:
rep: OQ622096.1__WGH28569.1__13VV501A_gene0073__00071__D542-667
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00271.38 best | Helicase_C | 40.9 | 3.00e-10 | 67.0% | 66.4% |
D5
medium
residues 307-376