←Back to structures
NTPase_helicase
Euk-VirShrimp_hemocyte_iridescent_virus
NTPase_helicase__YP_010084904__Shrimp_hemocyte_iridescent_virus__2039780
Identity
- Accession:
- YP_010084904 ↗
- Protein ID:
- NTPase_helicase
- Kingdom:
- euk
Quality
55.4
mean pLDDT
Taxonomy
Bamfordvirae›
Nucleocytoviricota›
Megaviricetes›
Pimascovirales›
Iridoviridae›
Decapodiridovirus›
Shrimp_hemocyte_iridescent_virus
TaxID: 2039780
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 248-349
D2
medium
residues 81-135
Domain cluster:
representative
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3b08E00 | 2.30.30.380 | Mainly Beta › Roll › SH3 type barrels. › Zn-finger domain of Sec23/24 | 0.52 | 36.0 | 3.53e-01 | 72.7% | 88.1% |
ECOD (12)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3584026 | 376.1.6.11 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › IBR domain › IBR, IBR_1 | 0.69 | 52.0 | 3.77e-01 | 83.6% | 33.8% |
| 3314132 | 376.1.6.10 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › IBR domain › IBR, PF26200 | 0.68 | 56.0 | 4.11e-01 | 92.7% | 62.0% |
| 3733157 | 376.1.6.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › IBR domain › IBR | 0.67 | 53.0 | 4.87e-01 | 89.1% | 94.7% |
| 3808540 | 376.1.6.9 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › IBR domain › PF26200 | 0.67 | 56.0 | 4.08e-01 | 92.7% | 62.0% |
| 3537468 | 376.1.6.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › IBR domain › IBR | 0.66 | 45.0 | 4.09e-01 | 70.9% | 77.3% |
| 3659007 | 376.1.4.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Ariadne-1 protein homolog › IBR | 0.65 | 44.0 | 4.02e-01 | 72.7% | 87.5% |
| 3457574 | 376.1.4.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Ariadne-1 protein homolog › IBR | 0.64 | 43.0 | 4.17e-01 | 70.9% | 83.1% |
| 3720616 | 376.1.6.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › IBR domain › IBR | 0.63 | 44.0 | 4.09e-01 | 74.5% | 65.7% |
| 3261052 | 376.1.4.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Ariadne-1 protein homolog | 0.63 | 44.0 | 4.56e-01 | 76.4% | 86.0% |
| 3269960 | 376.1.6.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › IBR domain › IBR | 0.62 | 42.0 | 4.01e-01 | 70.9% | 83.1% |
| 4024025 | 376.1.6.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › IBR domain › IBR | 0.61 | 41.0 | 3.87e-01 | 70.9% | 71.4% |
| 3882573 | 524.1.1.8 ↗ | alpha arrays › Ypt/Rab-GAP domain of gyp1p-like › Ypt/Rab-GAP domain of gyp1p › Ypt/Rab-GAP domain of gyp1p › RabGAP-TBC, RabGap-TBC_2 | 0.55 | 38.0 | 2.55e-01 | 74.5% | 32.4% |
D3
medium
residues 136-217