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N

Euk-Vir

Tospovirus_kiwifruit_YXW_2014

N__YP_009259256__Tospovirus_kiwifruit_YXW_2014__1857323

Identity

Accession:
YP_009259256 ↗
Protein ID:
N
Kingdom:
euk

Quality

70.1 mean pLDDT

Taxonomy

Orthornavirae› Negarnaviricota› Bunyaviricetes› Elliovirales› Tospoviridae› Tospovirus_kiwifruit/YXW/2014

TaxID: 1857323

Cluster

View cluster (18 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 7-21_34-140
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01533.23 best Tospo_nucleocap 139.0 2.50e-40 100.0% 43.5%
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3zlaD01 1.20.142.20 Mainly Alpha › Up-down Bundle › Poly(ADP-ribose) Polymerase; domain 1 › 0.82 65.0 6.49e-01 82.8% 90.5%
4bgpA01 1.20.142.20 Mainly Alpha › Up-down Bundle › Poly(ADP-ribose) Polymerase; domain 1 › 0.82 65.0 6.46e-01 82.8% 90.6%
4iduB01 1.20.142.20 Mainly Alpha › Up-down Bundle › Poly(ADP-ribose) Polymerase; domain 1 › 0.81 64.0 6.35e-01 82.8% 90.6%
1uouA01 1.20.970.10 Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 0.75 32.0 4.28e-01 72.1% 73.5%
4ga4A01 1.20.970.10 Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 0.72 31.0 4.12e-01 70.5% 73.1%
4gtnA01 1.20.970.10 Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 0.69 31.0 3.96e-01 71.3% 70.3%
1vquA01 1.20.970.10 Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 0.59 33.0 4.28e-01 95.9% 100.0%
2jqqA00 1.20.58.1240 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.56 43.0 4.01e-01 95.1% 64.3%
2crbA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.56 34.0 3.80e-01 77.0% 77.3%
2jbyA00 1.10.437.10 Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like 0.55 37.0 3.74e-01 82.8% 66.1%
4gyvE00 1.20.900.10 Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain 0.55 47.0 3.93e-01 94.3% 77.2%
1v4eA00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.54 43.0 3.35e-01 86.1% 45.0%
2elcA01 1.20.970.10 Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 0.54 30.0 3.76e-01 90.2% 97.0%
1owlA02 1.25.40.80 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.53 36.0 3.60e-01 91.8% 68.3%
1vi0A02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.53 38.0 3.68e-01 76.2% 86.9%
3bxjB03 1.10.506.10 Mainly Alpha › Orthogonal Bundle › GTPase Activation - p120GAP; domain 1 › GTPase Activation - p120gap; domain 1 0.53 41.0 3.50e-01 85.2% 82.0%
5nl6B01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.52 36.0 3.65e-01 70.5% 74.4%
1o5hA00 1.20.120.680 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Formiminotetrahydrofolate cyclodeaminase monomer, up-and-down helical bundle 0.50 43.0 3.71e-01 95.1% 62.5%
4ivnA02 3.40.50.10490 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 0.50 40.0 3.50e-01 86.1% 91.5%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2048169 3644.1.1.3 ↗ alpha complex topology › Leanyer virus nucleoprotein-related › Leanyer virus nucleoprotein-related › Leanyer virus nucleoprotein-related › Tospo_nucleocap 0.87 72.0 5.48e-01 87.7% 40.9%
3613499 601.4.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains 0.59 42.0 3.79e-01 73.0% 87.9%
3275032 6155.1.1.1 ↗ alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › MtN3_slv 0.57 42.0 4.18e-01 87.7% 73.1%
3256520 6155.1.1.1 ↗ alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › MtN3_slv 0.56 42.0 4.25e-01 87.7% 76.8%
4065783 150.1.2.5 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Heme oxygenase/Ribonucleotide reductase › TENA_THI-4 0.54 41.0 3.39e-01 80.3% 72.9%
3517159 5009.1.1.5 ↗ extended segments › Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) › Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) › Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) › PF26941 0.54 37.0 3.27e-01 70.5% 93.5%
4059335 109.4.1.1369 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › MA3, MIF4G 0.53 47.0 3.20e-01 100.0% 39.8%
3650518 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.52 47.0 3.73e-01 100.0% 72.0%
3891469 109.4.1.926 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › FH3_FHOD1-3 0.52 38.0 3.90e-01 86.1% 79.1%
3402482 5050.1.1.5 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Folate_carrier 0.52 39.0 3.35e-01 83.6% 46.8%
4968064 133.2.1.0 ↗ alpha bundles › DH domain-like › Methenyltetrahydrofolate cyclohydrolase-like › Methenyltetrahydrofolate cyclohydrolase-like 0.52 45.0 3.75e-01 95.1% 63.4%
3784531 1002.1.1.1 ↗ alpha complex topology › Fluoride ion channel › Fluoride ion channel › Fluoride ion channel › CRCB 0.50 39.0 3.82e-01 82.0% 95.4%
4012117 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.50 39.0 2.72e-01 83.6% 58.0%
D2 medium residues 141-246
PDB
Domain cluster: rep: N__YP_009449458__Calla_lily_chlorotic_spot_virus__309542__D160-244
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01533.23 best Tospo_nucleocap 163.3 9.40e-48 100.0% 41.1%