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N

Euk-Vir

Blacklegged_tick_phlebovirus_3

N__YP_010086237__Blacklegged_tick_phlebovirus_3__1844920

Identity

Accession:: YP_010086237 ↗
Protein ID:: N
Kingdom:: euk

Quality

71.4 mean pLDDT

Taxonomy

Orthornavirae› Negarnaviricota› Bunyaviricetes› Hareavirales› Phenuiviridae› Ixovirus› blacklegged_tick_virus_3

TaxID: 1844920

Cluster

View cluster (83 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-66

PDB

D2 high residues 174-271

PDB

Domain cluster: rep: putative_nucleoprotein__YP_009330256__Hubei_lepidoptera_virus_1__1922903__D59-144

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF05733.17 best	Tenui_N	39.9	5.30e-10	81.6%	31.2%

CATH (12)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1gv2A02	1.10.10.60	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like	0.61	30.0	4.13e-01	80.6%	100.0%
2x4hA00	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.55	38.0	3.50e-01	71.4%	96.9%
1k6yA01	1.10.10.200	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Integrase, N-terminal zinc-binding domain	0.54	24.0	3.32e-01	78.6%	87.0%
4im7A02	1.10.1040.10	Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2	0.54	41.0	3.21e-01	80.6%	58.7%
2wh5A00	1.20.80.10	Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein ›	0.53	34.0	3.59e-01	76.5%	71.1%
2lvsA01	1.10.10.60	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like	0.53	30.0	3.78e-01	74.5%	98.2%
1k78A01	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.52	31.0	3.48e-01	75.5%	83.3%
3bjoA00	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.52	43.0	4.25e-01	91.8%	88.3%
3ddhA02	1.10.150.240	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2	0.51	39.0	4.19e-01	80.6%	100.0%
1hbkA00	1.20.80.10	Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein ›	0.51	34.0	3.54e-01	78.6%	75.3%
3vfzB00	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.50	31.0	3.73e-01	80.6%	96.8%
2vvwA00	1.10.437.20	Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › dsDNA poxvirus	0.50	37.0	3.25e-01	78.6%	78.7%

ECOD (14)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1007268	3143.1.2.1 ↗	alpha complex topology › Rift Valley fever virus nucleocapsid protein-related › Rift Valley fever virus nucleocapsid protein-related › Rift Valley fever virus nucleocapsid protein › Tenui_N	0.93	78.0	5.53e-01	100.0%	34.3%
1030601	3143.1.2.1 ↗	alpha complex topology › Rift Valley fever virus nucleocapsid protein-related › Rift Valley fever virus nucleocapsid protein-related › Rift Valley fever virus nucleocapsid protein › Tenui_N	0.91	79.0	5.59e-01	100.0%	35.1%
3820015	3143.1.2.1 ↗	alpha complex topology › Rift Valley fever virus nucleocapsid protein-related › Rift Valley fever virus nucleocapsid protein-related › Rift Valley fever virus nucleocapsid protein › Tenui_N	0.80	74.0	5.30e-01	100.0%	37.2%
3178533	2004.1.1.363 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD-helicase+UvrD_C	0.65	59.0	3.43e-01	100.0%	20.2%
4626289	101.1.1.60 ↗	alpha arrays › HTH › HTH › Three-helical HTH › HTH_23	0.59	32.0	3.77e-01	94.9%	78.5%
5004578	101.1.1.545 ↗	alpha arrays › HTH › HTH › Three-helical HTH › DUF1699	0.55	34.0	3.95e-01	74.5%	100.0%
3549229	197.1.1.3 ↗	alpha bundles › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › ACBP	0.54	34.0	3.37e-01	75.5%	58.1%
3602631	101.1.2.150 ↗	alpha arrays › HTH › HTH › winged helix domain › HTH_45	0.54	40.0	4.28e-01	79.6%	98.8%
3033368	4033.1.1.0 ↗	alpha arrays › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like	0.53	37.0	3.51e-01	72.4%	76.7%
4967777	101.1.2.222 ↗	alpha arrays › HTH › HTH › winged helix domain › PH0730-like_N	0.53	42.0	4.46e-01	87.8%	100.0%
4941230	242.4.1.2 ↗	a+b two layers › Homing endonucleases-like › DNA polymerase II large subunit DP2 central a+b domain › DNA polymerase II large subunit DP2 central a+b domain › PolC_DP2_central	0.52	42.0	4.06e-01	98.0%	76.5%
3216519	197.1.1.3 ↗	alpha bundles › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › ACBP	0.51	34.0	3.56e-01	78.6%	74.4%
3537971	4156.1.1.1 ↗	alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63	0.51	41.0	3.56e-01	86.7%	82.0%
3357660	206.1.1.20 ↗	a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr	0.51	38.0	2.67e-01	80.6%	57.5%

D3 high residues 279-401

PDB

Domain cluster: rep: nucleocapsid_protein__YP_010086239__Norway_phlebovirus_1__2034330__D328-441

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF05733.17 best	Tenui_N	33.6	4.40e-08	78.0%	39.3%