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N
Euk-VirTaro_vein_chlorosis_virus
N__YP_224078__Taro_vein_chlorosis_virus__2908018
Identity
- Accession:
- YP_224078 ↗
- Protein ID:
- N
- Kingdom:
- euk
Quality
71.4
mean pLDDT
Taxonomy
Orthornavirae›
Negarnaviricota›
Monjiviricetes›
Mononegavirales›
Rhabdoviridae›
Alphanucleorhabdovirus›
Taro_vein_chlorosis_virus
TaxID: 2908018
Cluster
View cluster (144 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 42-252
Domain cluster:
rep: N_protein__YP_010086409__Maize_yellow_striate_virus__1168550__D39-103_154-262
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03216.19 best | Rhabdo_ncap_2 | 110.0 | 2.10e-31 | 98.6% | 57.4% |
D2
high
residues 255-403
Domain cluster:
rep: nucleocapsid__YP_009289348__Sanxia_Water_Strider_Virus_5__1608064__D276-411
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03216.19 best | Rhabdo_ncap_2 | 65.3 | 8.70e-18 | 57.0% | 30.6% |
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2gicD02 | 1.10.3610.10 | Mainly Alpha › Orthogonal Bundle › Rhabdovirus nucleoprotein-like › Nucleoprotein | 0.79 | 63.0 | 5.73e-01 | 93.3% | 64.1% |
| 2gttJ02 | 1.10.3610.10 | Mainly Alpha › Orthogonal Bundle › Rhabdovirus nucleoprotein-like › Nucleoprotein | 0.76 | 61.0 | 5.57e-01 | 93.3% | 65.8% |
| 3b40A02 | 1.10.287.650 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › L27 domain | 0.65 | 27.0 | 4.22e-01 | 78.5% | 100.0% |
| 3nc3B00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.58 | 35.0 | 2.63e-01 | 100.0% | 22.9% |
| 2oyoA02 | 1.20.1290.10 | Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like | 0.57 | 40.0 | 4.29e-01 | 88.6% | 84.8% |
| 2oebA00 | 1.10.520.30 | Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › AF1862-like domain | 0.54 | 32.0 | 3.27e-01 | 96.6% | 57.2% |
| 4dwlA00 | 1.20.1440.60 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence | 0.54 | 33.0 | 3.74e-01 | 97.3% | 81.5% |
| 1i6zA00 | 1.20.58.120 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain | 0.54 | 26.0 | 2.78e-01 | 84.6% | 48.9% |
| 2xi9A03 | 1.10.150.480 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.53 | 34.0 | 4.05e-01 | 83.9% | 95.0% |
| 2wy4A00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.52 | 37.0 | 3.86e-01 | 94.0% | 78.4% |
| 3pvlA01 | 1.25.40.530 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › MyTH4 domain | 0.51 | 36.0 | 3.29e-01 | 72.5% | 68.8% |
| 3cxbA03 | 1.10.1740.30 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › Secreted effector protein SifA helical domain | 0.51 | 26.0 | 3.27e-01 | 86.6% | 85.2% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3432081 | 142.3.1.0 ↗ | alpha complex topology › Sigma2 domain-like › Mitochondrial morphogenesis protein Sld7 C-terminal domain › Mitochondrial morphogenesis protein Sld7 C-terminal domain | 0.64 | 23.0 | 3.28e-01 | 87.9% | 67.1% |
| 3259602 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.53 | 34.0 | 4.03e-01 | 84.6% | 95.0% |
| 5037039 | 101.1.10.3 ↗ | alpha arrays › HTH › HTH › Cyclin-like › TFIIB | 0.52 | 35.0 | 3.77e-01 | 98.7% | 80.0% |
| 4938198 | 5054.1.1.0 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels | 0.52 | 30.0 | 3.69e-01 | 83.2% | 93.3% |