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N_protein
Euk-VirLettuce_yellow_mottle_virus
N_protein__YP_002308371__Lettuce_yellow_mottle_virus__471285
Identity
- Accession:
- YP_002308371 ↗
- Protein ID:
- N_protein
- Kingdom:
- euk
Quality
77.4
mean pLDDT
Taxonomy
Orthornavirae›
Negarnaviricota›
Monjiviricetes›
Mononegavirales›
Rhabdoviridae›
Alphacytorhabdovirus›
Lettuce_yellow_mottle_virus
TaxID: 471285
Cluster
View cluster (144 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 63-143_198-299
Domain cluster:
rep: N_protein__YP_010086409__Maize_yellow_striate_virus__1168550__D39-103_154-262
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03216.19 best | Rhabdo_ncap_2 | 75.2 | 8.60e-21 | 98.9% | 63.2% |
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2i2oA00 | 1.25.40.180 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.66 | 40.0 | 3.85e-01 | 94.5% | 52.1% |
| 3oxfA05 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.62 | 29.0 | 4.11e-01 | 87.4% | 100.0% |
| 1anxA04 | 1.10.220.10 | Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Annexin | 0.58 | 25.0 | 3.76e-01 | 91.8% | 98.6% |
| 2aw6A02 | 1.25.40.400 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.57 | 31.0 | 2.94e-01 | 95.1% | 41.2% |
| 2wmoA01 | 1.25.40.410 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › DOCK DHR2 domain, lobe A | 0.57 | 36.0 | 4.09e-01 | 94.0% | 85.1% |
| 2ff4A02 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.55 | 32.0 | 3.21e-01 | 94.0% | 54.4% |
| 2c9kA01 | 1.20.190.10 | Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › Pesticidal crystal protein, N-terminal domain | 0.55 | 38.0 | 3.52e-01 | 70.5% | 99.6% |
| 2a0uB01 | 1.20.120.420 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › translation initiation factor eif-2b, domain 1 | 0.52 | 35.0 | 3.72e-01 | 73.2% | 76.2% |
| 3lxuX06 | 1.25.40.710 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.51 | 35.0 | 3.18e-01 | 71.0% | 65.1% |
ECOD (18)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3886609 | 109.4.1.493 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Noc2 | 0.64 | 37.0 | 2.61e-01 | 95.1% | 18.1% |
| 3288064 | 601.1.1.55 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › DUF7134 | 0.63 | 36.0 | 3.92e-01 | 93.4% | 65.2% |
| 3507992 | 566.1.1.0 ↗ | alpha complex topology › P40 nucleoprotein-like › P40 nucleoprotein-related › P40 nucleoprotein-related | 0.63 | 56.0 | 4.62e-01 | 96.7% | 58.8% |
| 3462896 | 109.4.1.194 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_10 | 0.62 | 33.0 | 3.87e-01 | 88.0% | 71.3% |
| 3573542 | 566.1.1.0 ↗ | alpha complex topology › P40 nucleoprotein-like › P40 nucleoprotein-related › P40 nucleoprotein-related | 0.62 | 54.0 | 4.42e-01 | 95.1% | 52.1% |
| 3932176 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.60 | 39.0 | 2.68e-01 | 95.6% | 18.6% |
| 2476746 | 566.1.1.4 ↗ | alpha complex topology › P40 nucleoprotein-like › P40 nucleoprotein-related › P40 nucleoprotein-related › Ebola_NP | 0.60 | 54.0 | 4.28e-01 | 98.9% | 51.5% |
| 3168386 | 109.4.1.46 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › IBN_N | 0.60 | 36.0 | 3.21e-01 | 95.6% | 40.8% |
| 4016322 | 109.4.1.1304 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_8, TPR_10, TPR_12 | 0.59 | 31.0 | 3.18e-01 | 93.4% | 48.6% |
| 4017940 | 109.4.1.1969 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_4, TPR_10, TPR_12 | 0.57 | 34.0 | 3.24e-01 | 71.6% | 49.5% |
| 3593141 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.55 | 36.0 | 3.34e-01 | 71.6% | 50.0% |
| 3662136 | 109.4.1.903 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_28 | 0.55 | 39.0 | 3.19e-01 | 94.0% | 40.3% |
| 3725437 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.52 | 32.0 | 3.86e-01 | 73.8% | 96.4% |
| 4023501 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.52 | 32.0 | 3.76e-01 | 75.4% | 90.8% |
| 3845802 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.52 | 35.0 | 3.29e-01 | 95.1% | 53.6% |
| 1019365 | 604.5.1.2 ↗ | alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › PhoU | 0.51 | 25.0 | 3.11e-01 | 73.2% | 72.2% |
| 4936312 | 604.5.1.2 ↗ | alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › PhoU | 0.50 | 27.0 | 3.35e-01 | 72.7% | 84.5% |
| 5055478 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.50 | 30.0 | 2.59e-01 | 71.6% | 33.8% |
D2
medium
residues 305-452
Domain cluster:
rep: nucleocapsid_protein__YP_010087150__Cytorhabdovirus_caricae__2364291__D277-416_434-447
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03216.19 best | Rhabdo_ncap_2 | 97.4 | 1.50e-27 | 60.1% | 30.9% |