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N_protein

Euk-Vir

Puerto_Almendras_virus

N_protein__YP_009094389__Puerto_Almendras_virus__1479613

Identity

Accession:
YP_009094389 ↗
Protein ID:
N_protein
Kingdom:
euk

Quality

79.5 mean pLDDT

Taxonomy

Orthornavirae› Negarnaviricota› Monjiviricetes› Mononegavirales› Rhabdoviridae› Almendravirus› Puerto_Almendras_virus

TaxID: 1479613

Cluster

View cluster (34 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 236-430
PDB
Domain cluster: rep: nucleoprotein__YP_009094365__Almpiwar_virus__318843__D225-426
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00945.24 best Rhabdo_ncap 48.3 1.00e-12 85.6% 29.3%
D2 medium residues 31-136_198-216
PDB
Domain cluster: rep: nucleocapsid_protein__YP_008686596__Drosophila_obscura_sigmavirus_10A__666962__D36-146_214-247
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2gttC01 1.10.3570.10 Mainly Alpha › Orthogonal Bundle › Rhabdovirus nucleoprotein-like fold › Rhabdovirus nucleocapsid protein like domain 0.82 72.0 6.13e-01 93.6% 93.8%
3hhwK01 1.10.3570.10 Mainly Alpha › Orthogonal Bundle › Rhabdovirus nucleoprotein-like fold › Rhabdovirus nucleocapsid protein like domain 0.79 68.0 5.93e-01 92.0% 92.9%
4pl0A02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 36.0 2.94e-01 71.2% 75.8%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2966640 566.2.1.1 ↗ alpha complex topology › P40 nucleoprotein-like › Rhabdovirus nucleocapsid protein › Rhabdovirus nucleocapsid protein › Rhabdo_ncap 0.82 77.0 5.24e-01 100.0% 45.0%
4846751 566.2.1.1 ↗ alpha complex topology › P40 nucleoprotein-like › Rhabdovirus nucleocapsid protein › Rhabdovirus nucleocapsid protein › Rhabdo_ncap 0.81 76.0 5.73e-01 99.2% 68.8%
2992377 566.2.1.1 ↗ alpha complex topology › P40 nucleoprotein-like › Rhabdovirus nucleocapsid protein › Rhabdovirus nucleocapsid protein › Rhabdo_ncap 0.80 75.0 5.22e-01 100.0% 51.2%
3754910 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.53 39.0 2.50e-01 76.8% 38.8%
4959112 2004.1.1.5 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.52 36.0 3.00e-01 71.2% 76.6%
3486319 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.51 36.0 2.88e-01 72.8% 86.0%
D3 medium residues 137-197_217-233
PDB
Domain cluster: representative
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1w0bA01 1.20.58.420 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › AHSP 0.70 49.0 4.65e-01 73.1% 85.9%
2eh3A02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.66 45.0 3.94e-01 71.8% 58.2%
3ilkA02 1.10.8.590 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.62 44.0 4.66e-01 98.7% 86.8%
7s0rB01 1.20.81.20 Mainly Alpha › Up-down Bundle › Receptor-associated Protein › 0.60 46.0 4.71e-01 98.7% 86.8%
2zopA00 1.10.520.30 Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › AF1862-like domain 0.59 43.0 3.84e-01 76.9% 78.6%
4m70I00 1.20.5.4130 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.59 44.0 3.99e-01 97.4% 58.3%
1x9fC00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.59 45.0 3.68e-01 83.3% 79.2%
2f8lA01 1.10.150.470 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.59 40.0 3.96e-01 70.5% 100.0%
2vixA02 1.10.150.630 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.58 43.0 4.11e-01 78.2% 69.7%
2lwxA00 1.10.8.840 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ribosome-associated complex head domain 0.57 41.0 4.00e-01 98.7% 68.2%
1a41A02 1.20.120.380 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Type 1-topoisomerase catalytic fragment, domain 2 0.57 41.0 3.93e-01 78.2% 78.7%
2dt7B01 1.10.10.790 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Surp module 0.56 40.0 4.35e-01 78.2% 100.0%
3a06B03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.55 42.0 4.06e-01 94.9% 73.9%
2j9wB00 1.20.120.1130 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Vps28 C-terminal domain 0.54 39.0 3.68e-01 78.2% 84.8%
2mqaA00 1.10.274.60 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, repetitive domain 0.54 45.0 3.97e-01 98.7% 94.4%
2wyhB04 1.20.1270.50 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Glycoside hydrolase family 38, central domain 0.53 47.0 4.36e-01 100.0% 88.1%
1j5wA02 1.20.58.180 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Class II aaRS and biotin synthetases; domain 2 0.52 36.0 3.68e-01 71.8% 81.8%
5jazA03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.52 41.0 3.95e-01 94.9% 75.8%
2kiwA01 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.52 42.0 4.13e-01 89.7% 93.0%
3bjdA01 1.10.1240.20 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Lytic transglycosylase, superhelical linker domain 0.51 36.0 3.49e-01 73.1% 71.6%
2ao9I01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.51 34.0 3.32e-01 76.9% 60.9%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3616674 633.12.1.0 ↗ alpha bundles › Bromodomain-like › Ta0600-like › Ta0600-like 0.63 45.0 4.47e-01 100.0% 72.5%
3229748 1134.1.1.9 ↗ alpha bundles › C-terminal helical domain of alanine-tRNA ligase › C-terminal helical domain of alanine-tRNA ligase › Eukaryotic C-Ala helical domain › RSLD_CPSF6 0.62 42.0 4.14e-01 70.5% 71.8%
4589278 101.1.2.309 ↗ alpha arrays › HTH › HTH › winged helix domain › GPAT_C 0.61 50.0 4.63e-01 93.6% 95.2%
4215528 4003.1.1.1 ↗ alpha arrays › Helical bundle domain in YebC-like proteins › Helical bundle domain in YebC-like proteins › Helical bundle domain in YebC-like proteins › TACO1_YebC_N 0.60 40.0 4.51e-01 75.6% 100.0%
5013034 5054.1.1.8 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 0.59 41.0 3.93e-01 70.5% 70.0%
4997657 613.1.1.1 ↗ alpha complex topology › Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) › Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) › Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) › tRNA-synt_2c 0.58 45.0 3.38e-01 85.9% 96.1%
4995939 5054.1.1.8 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 0.58 41.0 3.71e-01 74.4% 62.9%
4303437 5059.1.1.1 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA 0.57 49.0 3.47e-01 100.0% 68.4%
3288893 604.1.1.141 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › DUF349 0.57 39.0 3.89e-01 70.5% 75.0%
3596222 3930.2.1.0 ↗ alpha bundles › Helical bundle insertion in helicase domains › Helical bundle in endoribonuclease Dicer › Helical bundle in endoribonuclease Dicer 0.57 39.0 3.56e-01 70.5% 88.6%
3335320 5054.1.1.1 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Lig_chan 0.57 40.0 3.91e-01 75.6% 74.4%
4602598 101.1.2.147 ↗ alpha arrays › HTH › HTH › winged helix domain › ORC4_C 0.57 45.0 3.94e-01 89.7% 89.6%
5057844 180.1.1.1 ↗ alpha bundles › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › PAP2 0.56 40.0 3.53e-01 78.2% 67.2%
4681537 3718.1.1.1 ↗ alpha bundles › Flagellar protein fliT › Flagellar protein fliT › Flagellar protein fliT › FliT 0.55 38.0 3.52e-01 71.8% 68.0%
3783816 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.54 45.0 4.12e-01 100.0% 67.3%
3421962 5081.1.1.1 ↗ alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid 0.54 39.0 3.44e-01 78.2% 58.4%
3958924 4033.1.1.0 ↗ alpha arrays › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like 0.53 37.0 3.57e-01 74.4% 71.1%
4982105 632.1.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain 0.52 41.0 4.17e-01 96.2% 89.3%
3299574 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.51 39.0 3.72e-01 93.6% 69.5%
4266909 5059.1.1.0 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter 0.51 37.0 3.29e-01 78.2% 76.7%
3800850 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.51 42.0 3.25e-01 98.7% 38.9%