N_protein

Euk-Vir

Ekpoma_virus_2

N_protein__YP_009505512__Ekpoma_virus_2__1987021

Identity

90.8 mean pLDDT

Orthornavirae› Negarnaviricota› Monjiviricetes› Mononegavirales› Rhabdoviridae› Tibrovirus› Ekpoma_virus_2

TaxID: 1987021

View cluster (144 members)

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high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 166-219

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00945.24 best	Rhabdo_ncap	28.5	1.00e-06	100.0%	11.9%

CATH (6)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2p67A03	1.10.287.130	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain	0.74	50.0	4.69e-01	70.4%	61.5%
4b3fX01	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.61	43.0	2.70e-01	75.9%	53.2%
1tj7A01	1.10.275.10	Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain)	0.59	43.0	3.45e-01	77.8%	81.9%
4hqeA00	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.58	44.0	3.68e-01	85.2%	86.7%
3mxtA02	3.30.1300.10	Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › Pantoate-beta-alanine ligase, C-terminal domain	0.56	38.0	3.16e-01	70.4%	83.0%
4gxbA02	1.20.80.60	Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein ›	0.54	41.0	3.90e-01	79.6%	90.3%

ECOD (6)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3702883	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.70	56.0	3.30e-01	85.2%	15.0%
3178099	109.3.1.96 ↗	alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank+Ank_2+Ank_4	0.66	56.0	3.59e-01	100.0%	19.3%
3581833	109.4.1.1484 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_ZSWIM8	0.63	52.0	3.30e-01	88.9%	64.3%
5056432	607.1.1.0 ↗	alpha arrays › Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain › Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain › Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain	0.58	47.0	3.73e-01	96.3%	78.4%
3900370	197.1.1.0 ↗	alpha bundles › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like	0.53	41.0	3.70e-01	83.3%	76.0%
3550640	197.1.1.5 ↗	alpha bundles › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › SNX17-31_F2_FERM	0.53	41.0	3.83e-01	83.3%	89.2%

D2 medium residues 220-310_323-349

PDB

Domain cluster: rep: nucleocapsid__YP_009302014__Wuhan_Louse_Fly_Virus_10__1608114__D226-319_345-374

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00945.24 best	Rhabdo_ncap	94.6	8.80e-27	100.0%	31.2%

D3 medium residues 311-322_373-427

PDB

Domain cluster: rep: nucleoprotein__YP_009362111__Marco_virus__1158190__D382-436