N_protein

Euk-Vir

Menghai_rhabdovirus

N_protein__YP_009552120__Menghai_rhabdovirus__1919071

Identity

76.7 mean pLDDT

Orthornavirae› Negarnaviricota› Monjiviricetes› Mononegavirales› Rhabdoviridae› Almendravirus› Menghai_virus

TaxID: 1919071

View cluster (144 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 41-229

PDB

Domain cluster: rep: nucleoprotein__YP_010084457__Lepeophtheirus_salmonis_rhabdovirus_127__1573761__D41-226

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00945.24 best	Rhabdo_ncap	36.2	4.80e-09	68.8%	28.1%

D2 medium residues 231-321

PDB

Domain cluster: rep: nucleocapsid__YP_009302014__Wuhan_Louse_Fly_Virus_10__1608114__D226-319_345-374

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00945.24 best	Rhabdo_ncap	39.4	5.10e-10	100.0%	22.4%

CATH (7)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2gicD02	1.10.3610.10	Mainly Alpha › Orthogonal Bundle › Rhabdovirus nucleoprotein-like › Nucleoprotein	0.93	90.0	6.70e-01	100.0%	47.2%
2gttJ02	1.10.3610.10	Mainly Alpha › Orthogonal Bundle › Rhabdovirus nucleoprotein-like › Nucleoprotein	0.90	85.0	6.48e-01	100.0%	48.4%
2ex3B02	1.20.1270.230	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › DNA terminal protein Gp3, priming domain	0.55	33.0	3.48e-01	94.5%	66.7%
4o1pA03	1.20.1440.180	Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › KEN domain	0.54	46.0	4.23e-01	97.8%	98.4%
2iw3A02	1.20.1390.20	Mainly Alpha › Up-down Bundle › PWI domain ›	0.54	34.0	3.44e-01	76.9%	62.2%
4iv9A03	1.10.405.40	Mainly Alpha › Orthogonal Bundle › Guanine Nucleotide Dissociation Inhibitor; domain 1 ›	0.52	38.0	3.31e-01	78.0%	81.9%
6jlzA01	1.20.120.1070	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Translation initiation factor eIF-2B, N-terminal domain	0.51	37.0	3.50e-01	75.8%	75.0%

ECOD (5)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3882	4192.1.1.1 ↗	alpha bundles › DNA terminal protein C-terminal domain › DNA terminal protein C-terminal domain › DNA terminal protein C-terminal domain › Phi-29_GP3	0.55	33.0	3.49e-01	94.5%	67.5%
3833892	632.7.1.0 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain	0.54	46.0	4.56e-01	100.0%	91.8%
4941976	632.11.1.0 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like	0.52	37.0	3.52e-01	95.6%	61.8%
3036200	108.2.1.0 ↗	alpha arrays › EF-hand › Insect pheromone/odorant-binding proteins › Insect pheromone/odorant-binding proteins	0.51	41.0	3.76e-01	90.1%	79.5%
4884083	129.1.1.16 ↗	alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › NAD_binding_11	0.50	36.0	3.38e-01	75.8%	70.2%

D3 medium residues 322-354_372-425

PDB

Domain cluster: representative

CATH (5)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1f81A00	1.20.1020.10	Mainly Alpha › Up-down Bundle › CREB-binding Protein; Chain A › TAZ domain	0.53	39.0	3.92e-01	77.0%	86.2%
2nscA01	3.30.70.1050	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Trigger factor ribosome-binding domain	0.52	34.0	3.63e-01	85.1%	74.4%
3ousA00	1.10.287.70	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.52	36.0	3.74e-01	93.1%	78.0%
3kb9A00	1.10.600.10	Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase	0.51	43.0	2.88e-01	92.0%	82.9%
4i1eA03	1.25.10.30	Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › IP3 receptor type 1 binding core, RIH domain	0.50	38.0	3.34e-01	82.8%	84.2%

ECOD (3)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3712734	5054.1.1.12 ↗	alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › NCA2	0.56	48.0	3.82e-01	93.1%	53.1%
5067411	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.51	38.0	3.41e-01	79.3%	57.6%
4821111	1075.4.1.1 ↗	alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › ABC_membrane	0.51	36.0	2.64e-01	75.9%	98.9%