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N_protein

Euk-Vir

Maize_yellow_striate_virus

N_protein__YP_010086409__Maize_yellow_striate_virus__1168550

Identity

Accession:: YP_010086409 ↗
Protein ID:: N_protein
Kingdom:: euk

Quality

73.9 mean pLDDT

Taxonomy

Orthornavirae› Negarnaviricota› Monjiviricetes› Mononegavirales› Rhabdoviridae› Betacytorhabdovirus› Maize_yellow_striate_virus

TaxID: 1168550

Cluster

View cluster (144 members)

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 39-103_154-262

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03216.19 best	Rhabdo_ncap_2	51.1	1.80e-13	71.3%	34.7%

CATH (11)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3ebbA00	1.25.10.10	Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant	0.67	40.0	3.46e-01	93.1%	38.3%
2gttC01	1.10.3570.10	Mainly Alpha › Orthogonal Bundle › Rhabdovirus nucleoprotein-like fold › Rhabdovirus nucleocapsid protein like domain	0.63	58.0	5.66e-01	100.0%	100.0%
3k49A00	1.25.10.10	Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant	0.59	36.0	2.86e-01	91.4%	28.6%
1zu2A00	1.25.40.10	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain	0.59	35.0	3.69e-01	93.1%	63.3%
4flbA00	1.25.40.90	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat ›	0.56	35.0	3.95e-01	94.3%	81.7%
4gzcA00	1.25.40.90	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat ›	0.56	37.0	4.17e-01	90.2%	87.1%
5cmyA00	1.25.40.90	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat ›	0.56	39.0	4.23e-01	89.7%	85.9%
1yz5B00	1.20.190.20	Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › 14-3-3 domain	0.54	36.0	3.34e-01	91.4%	50.7%
4epzA00	1.25.40.810	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › UpxZ	0.53	33.0	3.55e-01	91.4%	69.5%
4c0eA02	1.25.40.800	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat ›	0.53	38.0	3.55e-01	94.8%	57.8%
4hkaA01	1.20.58.480	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.52	44.0	3.77e-01	93.7%	79.6%

ECOD (4)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1815422	566.1.1.3 ↗	alpha complex topology › P40 nucleoprotein-like › P40 nucleoprotein-related › P40 nucleoprotein-related › Pneumo_ncap	0.62	55.0	5.10e-01	96.0%	99.1%
3845802	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.53	38.0	3.50e-01	94.3%	55.3%
3390061	5063.1.1.22 ↗	alpha bundles › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › LIN9_C	0.52	29.0	3.45e-01	98.3%	80.9%
3993713	109.4.1.14 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › MyTH4	0.51	40.0	4.05e-01	94.8%	81.1%

D2 high residues 268-408

PDB

Domain cluster: rep: nucleocapsid_protein__YP_010087150__Cytorhabdovirus_caricae__2364291__D277-416_434-447

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03216.19 best	Rhabdo_ncap_2	50.7	2.40e-13	59.6%	29.5%

D3 medium residues 104-153

PDB