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Nla-Pro
Euk-VirBrugmansia_mosaic_virus
Nla-Pro__YP_007354895__Brugmansia_mosaic_virus__1239452
Identity
- Accession:
- YP_007354895 ↗
- Protein ID:
- Nla-Pro
- Kingdom:
- euk
Quality
84.2
mean pLDDT
Taxonomy
Orthornavirae›
Pisuviricota›
Stelpaviricetes›
Patatavirales›
Potyviridae›
Potyvirus›
Brugmansia_mosaic_virus
TaxID: 1239452
Cluster
View cluster (187 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 16-96_185-207
Domain cluster:
rep: NIa-VPg-Pro_protein__YP_002956094__Triticum_mosaic_virus__431317__D201-288_375-394
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00863.26 best | Peptidase_C4 | 50.6 | 2.20e-13 | 81.7% | 32.8% |
CATH (39)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1lvmA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.95 | 91.0 | 9.03e-01 | 98.1% | 100.0% |
| 2o8lA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.82 | 61.0 | 6.27e-01 | 77.9% | 94.1% |
| 4yo1A01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.79 | 58.0 | 6.20e-01 | 77.9% | 88.8% |
| 3h7oA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.76 | 64.0 | 6.27e-01 | 89.4% | 99.1% |
| 3tk9A02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.73 | 62.0 | 6.20e-01 | 90.4% | 100.0% |
| 3cp7A01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.73 | 58.0 | 5.72e-01 | 84.6% | 97.3% |
| 2r0xA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.71 | 51.0 | 4.42e-01 | 74.0% | 78.8% |
| 2ol5A00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.70 | 50.0 | 4.14e-01 | 74.0% | 73.2% |
| 2zu2A01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.70 | 52.0 | 5.44e-01 | 77.9% | 84.7% |
| 4xhyA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.70 | 50.0 | 4.29e-01 | 74.0% | 74.5% |
| 3cb0D00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.70 | 50.0 | 4.29e-01 | 74.0% | 77.6% |
| 2o8mB01 | 2.40.10.120 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.70 | 43.0 | 5.14e-01 | 77.9% | 97.0% |
| 2w5eA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.69 | 44.0 | 5.12e-01 | 74.0% | 90.5% |
| 3ec6A00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.69 | 50.0 | 4.64e-01 | 74.0% | 82.8% |
| 3db0B00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.69 | 49.0 | 4.66e-01 | 74.0% | 87.1% |
| 1rz1A00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.69 | 49.0 | 4.31e-01 | 74.0% | 78.3% |
| 2hq9B00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.69 | 49.0 | 4.47e-01 | 74.0% | 84.7% |
| 2ig6A00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.68 | 49.0 | 4.38e-01 | 74.0% | 75.5% |
| 1flmA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.68 | 49.0 | 4.64e-01 | 74.0% | 86.9% |
| 2htiA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.68 | 49.0 | 4.59e-01 | 74.0% | 83.3% |
| 2a2jA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.68 | 48.0 | 3.87e-01 | 74.0% | 68.5% |
| 4ybnB00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.68 | 48.0 | 3.86e-01 | 74.0% | 64.4% |
| 3cp3A00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.67 | 48.0 | 4.50e-01 | 74.0% | 81.9% |
| 2ynaA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.67 | 50.0 | 5.43e-01 | 77.9% | 100.0% |
| 3u5wA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.67 | 48.0 | 4.49e-01 | 74.0% | 83.3% |
| 2ou5A00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.67 | 47.0 | 3.95e-01 | 73.1% | 68.6% |
| 2furB00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.65 | 47.0 | 3.83e-01 | 74.0% | 68.4% |
| 3pftA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.65 | 46.0 | 4.08e-01 | 74.0% | 78.2% |
| 3kyfA01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.65 | 46.0 | 4.53e-01 | 74.0% | 78.1% |
| 4n0rA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.65 | 39.0 | 4.26e-01 | 99.0% | 72.9% |
| 1miqA02 | 2.40.70.10 | Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases | 0.63 | 46.0 | 4.12e-01 | 77.9% | 84.9% |
| 2vrsA03 | 2.60.90.40 | Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › | 0.62 | 44.0 | 4.09e-01 | 74.0% | 97.0% |
| 1wruA01 | 2.30.300.10 | Mainly Beta › Roll › Phage tail proteins - horseshoe like beta roll fold › Baseplate protein-like domain - beta roll fold | 0.61 | 46.0 | 3.93e-01 | 80.8% | 90.9% |
| 4ecnA01 | 2.60.40.3540 | Mainly Beta › Sandwich › Immunoglobulin-like › Domain of unknown function DUF4458 | 0.59 | 41.0 | 4.18e-01 | 72.1% | 82.5% |
| 5dn6I00 | 2.60.15.10 | Mainly Beta › Sandwich › ATP Synthase; domain 1 › F0F1 ATP synthase delta/epsilon subunit, N-terminal | 0.57 | 35.0 | 3.99e-01 | 94.2% | 84.0% |
| 3d37B01 | 2.30.300.10 | Mainly Beta › Roll › Phage tail proteins - horseshoe like beta roll fold › Baseplate protein-like domain - beta roll fold | 0.56 | 43.0 | 3.67e-01 | 81.7% | 90.2% |
| 5jpnB04 | 2.60.120.1540 | Mainly Beta › Sandwich › Jelly Rolls › | 0.56 | 32.0 | 3.09e-01 | 96.2% | 48.8% |
| 1n26A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 36.0 | 3.58e-01 | 98.1% | 64.5% |
| 2e5yA01 | 2.60.15.10 | Mainly Beta › Sandwich › ATP Synthase; domain 1 › F0F1 ATP synthase delta/epsilon subunit, N-terminal | 0.51 | 37.0 | 3.99e-01 | 95.2% | 90.9% |
ECOD (57)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 257 | 1.1.5.3 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Peptidase_C4 | 0.96 | 93.0 | 6.95e-01 | 100.0% | 88.6% |
| 3066474 | 1.1.17.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Peptidase_C3 | 0.80 | 68.0 | 5.29e-01 | 89.4% | 91.8% |
| 1096110 | 1.1.17.3 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 | 0.78 | 65.0 | 5.06e-01 | 89.4% | 89.4% |
| None | — | 0.78 | 65.0 | 5.05e-01 | 89.4% | 88.9% | |
| 3405652 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.78 | 65.0 | 4.86e-01 | 89.4% | 93.1% |
| 2526961 | 1.1.5.33 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 | 0.77 | 65.0 | 5.01e-01 | 89.4% | 87.3% |
| 4205419 | 1.1.17.3 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 | 0.76 | 63.0 | 4.78e-01 | 87.5% | 90.0% |
| 3397446 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.76 | 65.0 | 4.82e-01 | 91.3% | 86.8% |
| 5051302 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.75 | 64.0 | 4.89e-01 | 90.4% | 91.1% |
| 3284072 | 1.1.5.33 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 | 0.75 | 65.0 | 4.92e-01 | 93.3% | 87.9% |
| 4279092 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.75 | 64.0 | 4.70e-01 | 90.4% | 95.6% |
| 3505198 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.75 | 63.0 | 5.03e-01 | 89.4% | 93.8% |
| 3791975 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.74 | 62.0 | 4.54e-01 | 89.4% | 95.6% |
| 3574288 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.74 | 62.0 | 4.49e-01 | 90.4% | 91.4% |
| 3518574 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.73 | 57.0 | 4.98e-01 | 82.7% | 68.4% |
| 4013582 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.73 | 62.0 | 5.57e-01 | 92.3% | 97.2% |
| 3448106 | 1.1.5.33 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 | 0.73 | 63.0 | 4.67e-01 | 92.3% | 88.4% |
| 3625701 | 1.1.5.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin | 0.72 | 61.0 | 4.49e-01 | 90.4% | 93.2% |
| 4982344 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.72 | 39.0 | 4.31e-01 | 95.2% | 64.7% |
| 4532479 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.72 | 63.0 | 4.69e-01 | 92.3% | 89.2% |
| 3744808 | 1.1.5.8 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx | 0.71 | 50.0 | 4.13e-01 | 74.0% | 79.5% |
| 170199 | 1.1.5.33 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 | 0.71 | 61.0 | 4.76e-01 | 93.3% | 98.6% |
| 4431199 | 1.1.5.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx,PNP_phzG_C | 0.70 | 50.0 | 3.98e-01 | 74.0% | 68.3% |
| 4019128 | 1.1.5.8 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx | 0.70 | 50.0 | 4.07e-01 | 74.0% | 81.1% |
| 4962625 | 1.1.5.31 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_ox_2 | 0.70 | 50.0 | 4.38e-01 | 74.0% | 79.3% |
| 3787756 | 1.1.5.8 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx | 0.69 | 50.0 | 4.29e-01 | 74.0% | 81.6% |
| 5047862 | 1.1.5.8 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx | 0.69 | 49.0 | 4.37e-01 | 74.0% | 79.1% |
| 4331393 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.69 | 49.0 | 4.45e-01 | 74.0% | 80.0% |
| 4981706 | 1.1.5.31 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_ox_2 | 0.69 | 49.0 | 4.29e-01 | 74.0% | 83.8% |
| 4129418 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.68 | 48.0 | 4.45e-01 | 74.0% | 79.3% |
| 3953421 | 1.1.5.31 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_ox_2 | 0.68 | 48.0 | 4.38e-01 | 74.0% | 78.6% |
| 5062740 | 1.1.5.31 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_ox_2 | 0.68 | 48.0 | 3.97e-01 | 74.0% | 69.2% |
| 4960378 | 1.1.5.31 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_ox_2 | 0.68 | 48.0 | 4.31e-01 | 74.0% | 82.8% |
| 4008655 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.67 | 48.0 | 4.30e-01 | 74.0% | 75.9% |
| 167706 | 1.1.5.31 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_ox_2 | 0.67 | 48.0 | 4.50e-01 | 74.0% | 81.9% |
| 5061768 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.67 | 39.0 | 4.47e-01 | 100.0% | 78.7% |
| 1695162 | 1.1.5.31 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_ox_2 | 0.67 | 50.0 | 3.92e-01 | 77.9% | 88.8% |
| 3951474 | 1.1.5.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx,PNP_phzG_C | 0.67 | 48.0 | 3.76e-01 | 74.0% | 65.0% |
| 4944685 | 1.1.5.18 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › FMN_bind_2 | 0.67 | 48.0 | 4.20e-01 | 74.0% | 85.3% |
| 3288278 | 1.1.5.31 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_ox_2 | 0.67 | 47.0 | 4.35e-01 | 74.0% | 78.5% |
| 3059162 | 1.1.13.30 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › E217_GP41 | 0.67 | 47.0 | 4.41e-01 | 72.1% | 96.0% |
| 4997723 | 1.1.5.31 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_ox_2 | 0.66 | 47.0 | 4.15e-01 | 74.0% | 83.9% |
| 3385776 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.66 | 47.0 | 4.34e-01 | 74.0% | 79.3% |
| 4958989 | 1.1.5.31 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_ox_2 | 0.64 | 46.0 | 4.02e-01 | 74.0% | 85.8% |
| 4977763 | 1.1.5.31 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_ox_2 | 0.64 | 46.0 | 4.03e-01 | 74.0% | 85.2% |
| 3522295 | 1.1.1.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp,A1_Propeptide | 0.64 | 47.0 | 3.23e-01 | 77.9% | 34.9% |
| 1322884 | 1.1.1.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp | 0.64 | 47.0 | 3.64e-01 | 77.9% | 56.0% |
| 3885658 | 11.1.1.126 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › IL4Ra_N | 0.63 | 41.0 | 4.28e-01 | 92.3% | 71.6% |
| 5016426 | 1.1.5.31 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_ox_2 | 0.63 | 45.0 | 3.91e-01 | 74.0% | 84.3% |
| 3357616 | 1.1.1.20 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › TAXi_C+TAXi_N | 0.61 | 44.0 | 3.04e-01 | 76.9% | 45.8% |
| 5084105 | 11.1.1.15 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PKD | 0.58 | 33.0 | 3.42e-01 | 95.2% | 58.0% |
| 3287961 | 3844.2.1.1 ↗ | a+b two layers › hydrogenase expression protein-like › MybT EspG5 chaperone › MybT EspG5 chaperone › ESX-1_EspG | 0.58 | 42.0 | 3.18e-01 | 76.0% | 71.9% |
| 3412933 | 1.1.1.28 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp, TAXi_C, TAXi_N | 0.56 | 45.0 | 3.08e-01 | 85.6% | 88.5% |
| 5055041 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.55 | 40.0 | 4.00e-01 | 75.0% | 96.2% |
| 4425367 | 1.1.1.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp | 0.55 | 43.0 | 4.28e-01 | 83.7% | 100.0% |
| 3216034 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 38.0 | 3.37e-01 | 73.1% | 67.3% |
| 2095485 | 1.1.5.38 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Peptidase_C107 | 0.53 | 47.0 | 3.79e-01 | 100.0% | 90.9% |
D2
high
residues 98-181
Domain cluster:
rep: ORF1a__YP_009047079__Human_astrovirus_BF34__1518575__D522-618
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00863.26 best | Peptidase_C4 | 63.1 | 3.50e-17 | 100.0% | 36.9% |