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ODV-E27
Euk-VirLymantria_xylina_nucleopolyhedrovirus
ODV-E27__YP_003517895__Lymantria_xylina_nucleopolyhedrovirus__166921
Identity
- Accession:
- YP_003517895 ↗
- Protein ID:
- ODV-E27
- Kingdom:
- euk
Quality
72.3
mean pLDDT
Taxonomy
TaxID: 166921
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-109
D2
medium
residues 110-186
Domain cluster:
representative
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2guzB00 | 1.10.287.110 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain | 0.70 | 40.0 | 4.39e-01 | 74.0% | 69.2% |
| 3fkeA01 | 1.10.8.950 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Filoviridae VP35, C-terminal inhibitory domain, helical subdomain | 0.59 | 36.0 | 3.81e-01 | 89.6% | 67.6% |
| 1pu6A01 | 1.10.1670.10 | Mainly Alpha › Orthogonal Bundle › Endonuclease Iii, domain 2 › Helix-hairpin-Helix base-excision DNA repair enzymes (C-terminal) | 0.58 | 43.0 | 4.09e-01 | 79.2% | 100.0% |
| 2aswA00 | 1.10.8.500 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › HAMP domain in histidine kinase | 0.58 | 33.0 | 3.77e-01 | 75.3% | 76.8% |
| 2kw6A00 | 6.10.140.1300 | Special › Helix non-globular › Helix Hairpins › | 0.53 | 39.0 | 4.24e-01 | 79.2% | 92.3% |
| 2ycdA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.52 | 41.0 | 3.63e-01 | 87.0% | 78.6% |
| 2zgyA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.52 | 43.0 | 3.60e-01 | 93.5% | 78.6% |
| 6bz0D01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.52 | 46.0 | 3.29e-01 | 100.0% | 95.6% |
ECOD (17)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4929397 | 2498.1.1.0 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" | 0.75 | 58.0 | 4.86e-01 | 87.0% | 49.2% |
| 3402099 | 5043.2.1.5 ↗ | extended segments › Sensor proteins transmembrane domains › NarQ transmembrane domain › NarQ transmembrane domain › ATP_synt_H | 0.74 | 44.0 | 4.51e-01 | 76.6% | 61.3% |
| 4042388 | 2498.1.1.39 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › SprT-like | 0.66 | 47.0 | 4.27e-01 | 89.6% | 55.2% |
| 4960523 | 2498.1.1.39 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › SprT-like | 0.65 | 47.0 | 4.16e-01 | 90.9% | 52.2% |
| 5055672 | 2498.1.1.39 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › SprT-like | 0.65 | 47.0 | 4.28e-01 | 90.9% | 57.1% |
| 3553835 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.64 | 39.0 | 3.93e-01 | 77.9% | 58.7% |
| 3877262 | 2498.1.1.62 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M76 | 0.64 | 47.0 | 4.05e-01 | 92.2% | 48.8% |
| 3305232 | 2498.1.1.62 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M76 | 0.63 | 46.0 | 3.60e-01 | 92.2% | 34.9% |
| 4980412 | 2498.1.1.0 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" | 0.62 | 49.0 | 3.65e-01 | 89.6% | 39.0% |
| 3251829 | 2498.1.1.62 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M76 | 0.61 | 44.0 | 3.49e-01 | 92.2% | 35.3% |
| 3589306 | 2498.1.1.0 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" | 0.61 | 49.0 | 3.63e-01 | 89.6% | 34.8% |
| 3969078 | 2498.1.1.156 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › DUF7844 | 0.59 | 47.0 | 3.55e-01 | 89.6% | 42.9% |
| 3807852 | 109.4.1.120 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Kinetochor_Ybp2 | 0.57 | 46.0 | 3.37e-01 | 87.0% | 49.5% |
| 5009328 | 150.1.1.207 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › DUF2175 | 0.55 | 45.0 | 4.04e-01 | 88.3% | 99.0% |
| 4959353 | 2498.1.1.58 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › DUF2201_N | 0.54 | 41.0 | 3.11e-01 | 81.8% | 92.4% |
| 5081419 | 210.1.3.3 ↗ | a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_4 | 0.53 | 42.0 | 2.93e-01 | 88.3% | 35.9% |
| 3250268 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.53 | 37.0 | 2.68e-01 | 75.3% | 25.9% |