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ODV-E66B

Euk-Vir

Spodoptera_exempta_nucleopolyhedrovirus

ODV-E66B__YP_010086533__Spodoptera_exempta_nucleopolyhedrovirus__1242863

Identity

Accession:
YP_010086533 ↗
Protein ID:
ODV-E66B
Kingdom:
euk

Quality

80.6 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Baculoviridae› Alphabaculovirus› Spodoptera_exempta_nucleopolyhedrovirus

TaxID: 1242863

Cluster

View cluster (43 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 58-111
PDB
Domain cluster: representative
D2 medium residues 112-244
PDB
Domain cluster: rep: ODV-E66__YP_009165734__Perigonia_lusca_single_nucleopolyhedrovirus__1675865__D100-138_155-225
D3 medium residues 245-303
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04850.20 best Baculo_E66 61.5 9.60e-17 100.0% 13.1%
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6ldkA01 1.10.730.10 Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 0.59 49.0 3.65e-01 100.0% 77.3%
2vebA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.55 44.0 3.22e-01 93.2% 98.4%
3bh1A02 1.20.1570.10 Mainly Alpha › Up-down Bundle › dip2346 fold › dip2346 domain like 0.54 46.0 3.96e-01 100.0% 72.3%
1f7uA02 1.10.730.10 Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 0.51 43.0 3.41e-01 94.9% 84.8%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4137845 7524.1.1.2 ↗ a/b three-layered sandwiches › ALDH-like › ALDH-like › ALDH-like › Histidinol_dh 0.64 41.0 2.82e-01 88.1% 18.5%
3432510 616.1.1.0 ↗ alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain 0.56 43.0 4.25e-01 98.3% 81.5%
4953842 138.1.1.0 ↗ alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain 0.55 43.0 3.57e-01 100.0% 46.1%
4954694 109.4.1.186 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ANAPC3 0.54 41.0 3.05e-01 91.5% 29.4%
4510534 140.1.1.11 ↗ alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › DALR_1 0.50 41.0 2.96e-01 100.0% 34.0%
D4 medium residues 304-403
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04850.20 best Baculo_E66 101.5 7.00e-29 98.0% 20.5%
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3vsmA01 1.50.10.100 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › Chondroitin AC/alginate lyase 0.89 76.0 5.04e-01 91.0% 25.6%
1x1iA02 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.77 52.0 3.73e-01 70.0% 27.5%
2q1fA03 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.75 51.0 3.67e-01 70.0% 28.9%
1hn0A03 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.73 50.0 3.54e-01 70.0% 26.7%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3576730 109.2.1.35 ↗ alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › Hepar_II_III_N 0.65 50.0 3.65e-01 100.0% 29.0%
4957570 79.1.1.0 ↗ beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain 0.52 31.0 2.81e-01 70.0% 44.4%
3190113 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 35.0 2.55e-01 70.0% 50.8%
D5 medium residues 404-569
PDB
Domain cluster: rep: odv-e66b__YP_009112683__Agrotis_segetum_nucleopolyhedrovirus_B__1580580__D393-432_447-516_538-651
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04850.20 best Baculo_E66 148.9 2.80e-43 100.0% 38.0%
D6 medium residues 570-654
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04850.20 best Baculo_E66 87.5 1.20e-24 100.0% 19.6%
CATH (25)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1f1sA03 2.60.220.10 Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › Polysaccharide lyase family 8-like, C-terminal 0.70 43.0 4.45e-01 98.8% 64.6%
2bhzA04 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.69 54.0 5.86e-01 96.5% 98.6%
1kwgA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.64 38.0 4.70e-01 88.2% 100.0%
4cvuA05 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 40.0 3.96e-01 87.1% 61.8%
4tpsA00 3.30.310.250 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Sporulation inhibitor of replication protein SirA 0.61 43.0 3.64e-01 78.8% 44.3%
2q1fA04 2.60.220.10 Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › Polysaccharide lyase family 8-like, C-terminal 0.61 55.0 4.62e-01 100.0% 92.4%
1tfkA00 3.10.450.200 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.61 31.0 2.98e-01 96.5% 43.6%
3sd2A01 2.60.40.3080 Mainly Beta › Sandwich › Immunoglobulin-like › 0.60 36.0 3.81e-01 87.1% 66.2%
1x1iA03 2.60.220.10 Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › Polysaccharide lyase family 8-like, C-terminal 0.59 53.0 4.77e-01 100.0% 85.6%
1rwhA03 2.60.220.10 Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › Polysaccharide lyase family 8-like, C-terminal 0.59 52.0 4.75e-01 100.0% 86.0%
1ujrA01 3.30.720.50 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.58 31.0 3.14e-01 100.0% 51.8%
2wcoA03 2.60.220.10 Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › Polysaccharide lyase family 8-like, C-terminal 0.57 49.0 4.50e-01 100.0% 83.5%
4ba0A01 2.60.40.1760 Mainly Beta › Sandwich › Immunoglobulin-like › glycosyl hydrolase (family 31) 0.53 46.0 3.57e-01 97.6% 96.5%
2htaA00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.53 45.0 3.22e-01 100.0% 87.5%
1cgtA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.53 45.0 4.40e-01 98.8% 94.7%
1r75A00 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.53 47.0 4.33e-01 100.0% 80.0%
5e1qA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.52 43.0 4.22e-01 95.3% 99.0%
6fucA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.52 39.0 3.94e-01 95.3% 79.1%
5jzjA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.52 41.0 3.98e-01 96.5% 77.7%
6mv2A01 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 40.0 3.82e-01 85.9% 75.5%
3f79E00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.52 47.0 3.38e-01 100.0% 52.1%
1s9iB01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.51 40.0 3.96e-01 95.3% 79.6%
2bkkA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.50 40.0 4.01e-01 94.1% 82.2%
5mmjh01 3.30.1370.30 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.50 34.0 3.56e-01 90.6% 78.7%
2tbvA00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.50 43.0 3.08e-01 100.0% 30.8%
ECOD (27)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3516397 6129.1.1.1 ↗ beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › VWD 0.87 39.0 2.97e-01 100.0% 20.5%
3996720 4357.1.1.1 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.65 32.0 3.55e-01 100.0% 57.1%
3587134 12.6.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycoside hydrolase family 127 middle domain-related › Glycoside hydrolase family 127 middle domain-related 0.65 38.0 4.59e-01 96.5% 90.9%
3222419 331.23.1.0 ↗ a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain 0.63 37.0 3.95e-01 71.8% 66.7%
4937746 3016.1.1.0 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.59 43.0 3.91e-01 100.0% 56.5%
3981185 241.1.1.25 ↗ a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › PF27378 0.57 45.0 4.12e-01 100.0% 63.5%
3707133 12.3.1.19 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Gal_mutarotas_2 0.57 52.0 3.86e-01 100.0% 57.6%
4034422 3425.2.1.3 ↗ a+b three layers › Two-component system yycF/yycG regulatory protein yycH-like › YycH C-terminal domain › YycH C-terminal domain › PF29809 0.56 52.0 3.66e-01 100.0% 44.9%
5044321 12.3.1.19 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Gal_mutarotas_2 0.55 48.0 3.65e-01 100.0% 92.3%
3588839 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.55 44.0 4.08e-01 90.6% 68.7%
3927192 3523.1.1.0 ↗ beta meanders › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) 0.54 45.0 3.75e-01 100.0% 52.9%
3496493 331.2.1.0 ↗ a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain 0.54 41.0 3.29e-01 82.4% 55.6%
3699437 10.15.1.1 ↗ beta sandwiches › jelly-roll › Smp-1-like › Smp-1-like › DUF1935 0.54 46.0 4.15e-01 95.3% 70.0%
3988298 12.6.1.11 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycoside hydrolase family 127 middle domain-related › Glycoside hydrolase family 127 middle domain-related › YfhO 0.53 39.0 3.92e-01 85.9% 77.6%
4646896 210.1.3.4 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_6 0.53 49.0 3.41e-01 100.0% 54.7%
5051764 622.4.1.0 ↗ alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related 0.53 43.0 3.50e-01 87.1% 85.8%
3951046 210.1.3.4 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_6 0.53 48.0 3.36e-01 100.0% 59.6%
5054850 3425.2.1.0 ↗ a+b three layers › Two-component system yycF/yycG regulatory protein yycH-like › YycH C-terminal domain › YycH C-terminal domain 0.53 47.0 3.36e-01 100.0% 52.3%
3284770 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.52 45.0 3.10e-01 96.5% 27.2%
3581029 206.1.1.83 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, ABC1, PK_Tyr_Ser-Thr 0.52 41.0 2.65e-01 85.9% 36.5%
3617898 79.1.1.0 ↗ beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain 0.52 38.0 3.15e-01 89.4% 44.8%
3289291 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.51 41.0 3.66e-01 90.6% 63.8%
2516379 319.1.1.3 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › CS 0.51 40.0 3.76e-01 87.1% 74.5%
3816749 5.1.3.118 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.51 39.0 2.64e-01 81.2% 28.1%
3734170 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.51 40.0 3.04e-01 87.1% 58.9%
5037569 12.3.1.19 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Gal_mutarotas_2 0.51 45.0 3.47e-01 100.0% 60.0%
3998951 3523.1.1.0 ↗ beta meanders › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) 0.51 41.0 3.40e-01 100.0% 49.3%