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ODV-E66

Euk-Vir

Penaeus_monodon_nudivirus

ODV-E66__YP_009051872__Penaeus_monodon_nudivirus__1529056

Identity

Accession:
YP_009051872 ↗
Protein ID:
ODV-E66
Kingdom:
euk

Quality

62.7 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Nudiviridae› Gammanudivirus› Penaeus_monodon_nudivirus

TaxID: 1529056

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-142
PDB
Domain cluster: rep: ODV-e66__YP_002854745__Euproctis_pseudoconspersa_nucleopolyhedrovirus__307467__D22-215
D2 medium residues 143-236
PDB
Domain cluster: representative
CATH (31)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3vsmA01 1.50.10.100 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › Chondroitin AC/alginate lyase 0.76 70.0 4.65e-01 100.0% 27.4%
1j0mA01 1.50.10.100 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › Chondroitin AC/alginate lyase 0.69 61.0 4.12e-01 100.0% 27.1%
2gz6A00 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.65 58.0 3.86e-01 100.0% 33.9%
4c1sA00 1.50.10.20 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.64 57.0 3.82e-01 100.0% 31.2%
1hn0A02 1.50.10.100 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › Chondroitin AC/alginate lyase 0.64 56.0 3.77e-01 100.0% 39.3%
2fupA00 1.20.58.300 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › FlgN-like 0.63 56.0 5.07e-01 97.9% 92.1%
4l8eA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.63 50.0 4.81e-01 98.9% 74.5%
1j5wA02 1.20.58.180 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Class II aaRS and biotin synthetases; domain 2 0.61 40.0 4.37e-01 90.4% 81.8%
4fnvA01 1.50.10.100 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › Chondroitin AC/alginate lyase 0.61 54.0 3.62e-01 100.0% 49.9%
8h6rA01 1.20.930.10 Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 0.61 48.0 5.03e-01 98.9% 95.3%
2wvxA04 1.20.1610.10 Mainly Alpha › Up-down Bundle › Glycosyl hydrolase family fold › alpha-1,2-mannosidases domains 0.60 49.0 4.03e-01 89.4% 100.0%
3fr3B02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.60 49.0 4.63e-01 98.9% 74.8%
4agsB04 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.58 50.0 4.53e-01 98.9% 69.2%
1htmD00 3.90.20.10 Alpha Beta › Alpha-Beta Complex › Hemagglutinin Ectodomain; Chain B › 0.58 34.0 3.12e-01 96.8% 43.9%
1yxrA01 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.57 39.0 4.21e-01 89.4% 87.8%
3u8vA00 1.20.120.660 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › IL-4 antagonist (De novo design) like domain 0.57 36.0 3.82e-01 91.5% 71.1%
4u7iA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.57 43.0 4.41e-01 90.4% 82.8%
3l8rA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.56 45.0 4.43e-01 90.4% 80.4%
2v0cA04 1.10.730.10 Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 0.56 44.0 3.74e-01 85.1% 84.3%
1wcrA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.55 44.0 4.36e-01 90.4% 82.5%
2xqyA01 3.30.500.50 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › 0.53 45.0 3.70e-01 100.0% 50.0%
3tixB03 3.40.50.11490 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.53 40.0 3.50e-01 96.8% 51.0%
2d2sA01 1.20.58.1210 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Exo84p, N-terminal helical domain 0.53 41.0 3.85e-01 98.9% 66.4%
1dvoA00 1.10.1710.10 Mainly Alpha › Orthogonal Bundle › Fertility Inhibition Protein O; Chain: A; Domain 1 › ProQ/FinO domain 0.53 37.0 3.20e-01 73.4% 73.7%
2dpmA02 1.10.1020.10 Mainly Alpha › Orthogonal Bundle › Adenine-specific Methyltransferase; domain 2 › Adenine-specific Methyltransferase, Domain 2 0.53 34.0 3.32e-01 96.8% 58.3%
2o8hA00 1.10.1300.10 Mainly Alpha › Orthogonal Bundle › Catalytic domain of cyclic nucleotide phosphodiesterase 4b2b › 3'5'-cyclic nucleotide phosphodiesterase, catalytic domain 0.52 44.0 3.20e-01 100.0% 54.7%
1h2tC03 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.52 45.0 3.41e-01 100.0% 47.5%
3iqcA00 1.20.120.340 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Flagellar protein FliS 0.51 37.0 3.49e-01 90.4% 60.5%
3dzaA01 1.20.120.1940 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › YfdX protein domain 0.51 43.0 4.03e-01 92.6% 78.6%
4ebjA02 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.51 40.0 3.69e-01 87.2% 99.2%
1ah7A00 1.10.575.10 Mainly Alpha › Orthogonal Bundle › P1 Nuclease › P1 Nuclease 0.51 42.0 3.14e-01 91.5% 74.3%
ECOD (28)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
59271 109.2.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid 0.68 61.0 4.10e-01 100.0% 27.1%
4475 109.2.1.27 ↗ alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › Lyase_8_N 0.68 61.0 4.10e-01 100.0% 27.1%
4955288 109.2.1.19 ↗ alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › C5-epim_C 0.66 58.0 4.11e-01 100.0% 50.3%
4960577 109.2.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid 0.65 58.0 3.82e-01 100.0% 25.2%
4836750 109.2.1.22 ↗ alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › GlcNAc_2-epim 0.64 57.0 3.80e-01 100.0% 34.0%
3740421 603.1.1.98 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins › SNARE, Syntaxin_2 0.62 56.0 4.30e-01 98.9% 81.5%
4954446 604.3.1.0 ↗ alpha bundles › Spectrin repeat-like › BAG domain › BAG domain 0.61 43.0 4.70e-01 90.4% 92.0%
3570726 109.4.1.210 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_19 0.58 51.0 4.28e-01 98.9% 61.8%
4056054 604.10.1.1 ↗ alpha bundles › Spectrin repeat-like › Enzyme IIa from lactose specific PTS, IIa-lac › Enzyme IIa from lactose specific PTS, IIa-lac › PTS_IIA 0.58 46.0 4.42e-01 89.4% 73.6%
3260131 109.4.1.414 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › MMS19_N 0.58 51.0 3.64e-01 100.0% 44.4%
3722747 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.58 48.0 3.27e-01 91.5% 45.9%
2323994 604.37.1.0 ↗ alpha bundles › Spectrin repeat-like › Legionella effector Lem22 › Legionella effector Lem22 0.58 42.0 4.31e-01 91.5% 80.0%
4005326 109.2.1.42 ↗ alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › MGH1-like_GH 0.57 51.0 3.20e-01 100.0% 20.4%
4002747 109.4.1.1812 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RYDR_ITPR, RIH_assoc 0.57 48.0 2.64e-01 100.0% 5.8%
3584278 109.17.1.8 ↗ alpha superhelices › Repetitive alpha hairpins › Proteasome activator BLM10 › Proteasome activator BLM10 › HEAT_PSME4_mid, HEAT_PSME4 0.56 49.0 2.69e-01 100.0% 9.3%
3725359 109.4.1.1939 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ECM29_N, HEAT_ECM29 0.56 49.0 2.80e-01 100.0% 13.6%
4437443 604.12.1.9 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › ATG1-like_MIT2 0.56 42.0 4.23e-01 90.4% 81.1%
3193797 109.24.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Helical domain in dedicator of cytokinesis protein 9 › Helical domain in dedicator of cytokinesis protein 9 0.56 48.0 4.48e-01 98.9% 83.3%
2856784 109.2.1.42 ↗ alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › MGH1-like_GH 0.54 47.0 3.36e-01 100.0% 34.1%
3579058 109.4.1.313 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › UTP20_N 0.54 48.0 3.59e-01 100.0% 54.2%
3240978 131.1.1.1 ↗ alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › PDEase_I 0.53 46.0 3.24e-01 100.0% 49.4%
4541925 5000.4.1.0 ↗ alpha arrays › Toxins' membrane translocation domains › delta-Endotoxin (insectocide), N-terminal domain › delta-Endotoxin (insectocide), N-terminal domain 0.53 45.0 3.50e-01 98.9% 80.9%
1759309 601.13.1.1 ↗ alpha bundles › Four-helical up-and-down bundle › Flagellar export chaperone FliS › Flagellar export chaperone FliS › Flagellin_C,FliS 0.52 43.0 3.60e-01 90.4% 94.5%
3304076 109.4.1.493 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Noc2 0.52 45.0 3.61e-01 100.0% 62.5%
3970690 4033.1.1.0 ↗ alpha arrays › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like 0.52 43.0 4.01e-01 97.9% 73.3%
3806548 109.4.1.1718 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF26716 0.52 46.0 4.48e-01 100.0% 93.3%
3786708 109.40.1.1 ↗ alpha superhelices › Repetitive alpha hairpins › DNA polymerase alpha-binding protein Ctf4 C-terminal domain › DNA polymerase alpha-binding protein Ctf4 C-terminal domain › Hira 0.51 44.0 3.59e-01 100.0% 49.2%
3568928 109.4.1.451 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Iml2-TPR_39 0.50 43.0 3.25e-01 100.0% 43.8%
D3 medium residues 237-325
PDB
D4 medium residues 396-432_447-468
PDB
D5 medium residues 495-551
PDB