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OK018136.1__UDL16974.1__X__00050

Bact-Vir

OK018136.1__UDL16974.1__X__00050

Identity

Accession:
OK018136 ↗
Kingdom:
phage

Quality

87.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-110
PDB
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4k0dA00 1.20.120.1730 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.66 58.0 5.30e-01 95.4% 83.2%
1st6A01 1.20.120.810 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Vinculin, Vh2 four-helix bundle 0.60 53.0 4.09e-01 100.0% 75.3%
2p61A00 1.20.120.490 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Hypothetical protein TM1646-like domain 0.60 52.0 5.17e-01 94.4% 100.0%
4fx5A03 1.20.120.1690 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.59 49.0 5.08e-01 99.1% 99.0%
7c1iA01 1.20.120.160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain 0.58 44.0 4.61e-01 88.0% 88.0%
1vkeB00 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.58 37.0 3.79e-01 74.1% 67.3%
6fdmA02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.57 38.0 3.79e-01 86.1% 65.5%
1zoyD00 1.20.1300.10 Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit 0.57 40.0 4.12e-01 72.2% 99.0%
1hw1A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 38.0 4.27e-01 71.3% 98.7%
3mq0A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 36.0 4.08e-01 82.4% 93.5%
4o5vA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 35.0 4.06e-01 75.0% 98.6%
7fhyB01 1.50.10.100 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › Chondroitin AC/alginate lyase 0.55 44.0 3.23e-01 86.1% 90.4%
2nutB01 1.20.120.730 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Sec23/Sec24 helical domain 0.55 44.0 4.00e-01 89.8% 71.2%
2jx0A00 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.53 45.0 4.26e-01 91.7% 84.0%
3kmuA02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.53 39.0 3.39e-01 79.6% 91.1%
2fxaA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 38.0 3.43e-01 75.9% 65.4%
1q0sA02 1.10.1020.10 Mainly Alpha › Orthogonal Bundle › Adenine-specific Methyltransferase; domain 2 › Adenine-specific Methyltransferase, Domain 2 0.52 37.0 3.91e-01 82.4% 85.3%
1c0wA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 34.0 3.87e-01 72.2% 97.3%
2zj2A03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 36.0 3.92e-01 75.0% 100.0%
ECOD (28)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4883406 622.4.1.1 alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related › Blo-t-5 0.66 45.0 4.47e-01 71.3% 90.5%
3795092 622.4.1.0 alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related 0.65 49.0 4.52e-01 78.7% 94.1%
3574069 604.12.1.62 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › DuoxA 0.65 47.0 4.43e-01 74.1% 88.0%
3943344 183.1.1.0 alpha duplicates or obligate multimers › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain 0.61 46.0 4.25e-01 92.6% 61.4%
4288608 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.61 45.0 3.09e-01 76.9% 59.5%
4530211 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.60 42.0 4.07e-01 79.6% 63.2%
4399586 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.58 42.0 3.96e-01 77.8% 62.3%
4483341 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.57 41.0 4.08e-01 79.6% 71.3%
4932792 5060.2.1.0 alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain 0.56 47.0 4.50e-01 92.6% 98.4%
4120593 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 41.0 3.70e-01 85.2% 56.0%
5029517 5060.2.1.0 alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain 0.55 46.0 4.22e-01 92.6% 86.2%
3175795 6155.1.1.2 alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › PQ-loop 0.55 41.0 3.67e-01 78.7% 70.3%
4537278 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.54 43.0 4.02e-01 92.6% 67.1%
4224500 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.54 47.0 4.19e-01 99.1% 67.5%
3349468 3016.1.1.2 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_3 0.54 35.0 4.03e-01 78.7% 97.3%
3713581 3187.1.1.1 alpha bundles › Microtubule-Binding Domain of Flagellar Dynein › Microtubule-Binding Domain of Flagellar Dynein › Microtubule-Binding Domain of Flagellar Dynein › MT 0.53 42.0 3.69e-01 97.2% 56.2%
3504887 3525.1.1.2 alpha arrays › Bromodomain-containing protein 4 ET domain › Bromodomain-containing protein 4 ET domain › Bromodomain-containing protein 4 ET domain › AHD 0.53 31.0 3.86e-01 76.9% 100.0%
4371277 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.53 40.0 3.75e-01 83.3% 62.1%
4993486 5060.2.1.1 alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF 0.53 43.0 3.91e-01 89.8% 86.0%
4486101 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.53 39.0 3.78e-01 84.3% 68.8%
4058198 101.1.2.170 alpha arrays › HTH › HTH › winged helix domain › HTH_51 0.53 38.0 3.52e-01 75.0% 70.7%
3740653 5001.1.1.87 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › EXS 0.52 44.0 3.31e-01 90.7% 47.4%
4309314 109.4.1.121 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Mo25 0.52 45.0 3.17e-01 100.0% 61.8%
4990657 3226.1.1.1 alpha complex topology › Uracil Transporter UraA › Uracil Transporter UraA › Uracil Transporter UraA › Xan_ur_permease 0.52 47.0 3.12e-01 100.0% 75.3%
3711919 3187.1.1.0 alpha bundles › Microtubule-Binding Domain of Flagellar Dynein › Microtubule-Binding Domain of Flagellar Dynein › Microtubule-Binding Domain of Flagellar Dynein 0.52 40.0 3.47e-01 97.2% 51.4%
4989162 101.1.2.21 alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repress 0.52 33.0 3.81e-01 78.7% 92.0%
3605923 3187.1.1.1 alpha bundles › Microtubule-Binding Domain of Flagellar Dynein › Microtubule-Binding Domain of Flagellar Dynein › Microtubule-Binding Domain of Flagellar Dynein › MT 0.51 40.0 3.56e-01 97.2% 55.8%
4934323 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.51 35.0 3.58e-01 75.9% 72.4%
D2 medium residues 114-167
PDB
Domain cluster: representative
CATH (28)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5t1dB00 3.10.390.20 Alpha Beta › Roll › SAND domain › Viral glycoprotein L 0.71 60.0 4.95e-01 96.3% 86.9%
1wdzA00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.69 55.0 3.66e-01 90.7% 26.8%
2lpeA01 6.10.140.1120 Special › Helix non-globular › Helix Hairpins › 0.69 55.0 4.97e-01 90.7% 76.9%
2qtfA02 6.10.250.2860 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.68 51.0 5.32e-01 81.5% 100.0%
6r1nA01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.68 54.0 4.49e-01 90.7% 62.1%
1fs0G02 1.10.287.80 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain 0.68 55.0 4.70e-01 90.7% 70.8%
3b2eF00 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.67 53.0 5.13e-01 88.9% 98.4%
1hr5A00 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.67 50.0 5.22e-01 81.5% 97.9%
2ic6A00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.66 51.0 4.71e-01 87.0% 94.4%
4rg8A04 1.10.287.1240 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.65 48.0 4.70e-01 83.3% 72.6%
1z0jB00 4.10.860.20 Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › Rabenosyn, Rab binding domain 0.65 46.0 4.69e-01 75.9% 94.1%
3fxdB00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.65 48.0 4.78e-01 83.3% 86.2%
4ijjB00 1.20.120.910 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › DksA, coiled-coil domain 0.65 51.0 3.94e-01 90.7% 44.6%
8ctsB01 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.64 45.0 3.89e-01 74.1% 96.6%
3obfA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.64 46.0 3.25e-01 75.9% 91.5%
2kpqA01 6.10.250.730 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.63 43.0 3.92e-01 72.2% 73.0%
4b3fX01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.62 49.0 3.08e-01 88.9% 16.0%
2q12A00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.62 48.0 3.24e-01 90.7% 25.2%
5lnkA00 1.20.58.1610 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 0.61 46.0 3.72e-01 85.2% 45.2%
3icxA01 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.61 49.0 4.50e-01 90.7% 77.3%
4aflA00 6.10.140.1740 Special › Helix non-globular › Helix Hairpins › 0.60 48.0 4.05e-01 92.6% 63.7%
2p4vA01 1.10.287.180 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Transcription elongation factor, GreA/GreB, N-terminal domain 0.60 45.0 4.12e-01 85.2% 90.8%
2c35A00 1.20.1250.40 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › RNA Polymerase II, Rpb4 subunit 0.60 45.0 3.63e-01 90.7% 81.2%
2b3tB01 6.10.140.1980 Special › Helix non-globular › Helix Hairpins › 0.58 43.0 4.14e-01 85.2% 73.8%
3l1nA01 6.10.140.790 Special › Helix non-globular › Helix Hairpins › 0.57 41.0 4.25e-01 77.8% 90.2%
3qkyA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.53 40.0 2.75e-01 92.6% 49.4%
3tp3A02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.53 41.0 3.05e-01 85.2% 40.5%
4dciA00 6.10.140.1110 Special › Helix non-globular › Helix Hairpins › 0.51 38.0 3.00e-01 90.7% 49.7%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3395965 1134.1.1.0 alpha bundles › C-terminal helical domain of alanine-tRNA ligase › C-terminal helical domain of alanine-tRNA ligase › Eukaryotic C-Ala helical domain 0.72 54.0 5.41e-01 81.5% 83.6%
3585224 192.29.1.1 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB_dom 0.71 56.0 4.91e-01 88.9% 67.1%
3516570 192.29.1.1 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB_dom 0.70 56.0 5.02e-01 90.7% 76.2%
3315495 192.8.1.0 alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain 0.69 55.0 4.83e-01 90.7% 67.1%
3746144 192.29.1.273 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › NICE-3 0.69 49.0 4.67e-01 75.9% 70.8%
4028848 210.2.1.1 a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain › PP2C 0.69 54.0 3.41e-01 88.9% 22.0%
3478131 109.4.1.267 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CIP2A_N 0.68 59.0 3.28e-01 98.1% 66.5%
3878000 192.29.1.1 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB_dom 0.67 57.0 4.82e-01 98.1% 74.7%
3400926 3758.1.1.45 alpha bundles › Bacterial hemolysins-like › Bacterial hemolysins › Bacterial hemolysins › Not3 0.67 51.0 4.14e-01 88.9% 50.4%
3529043 3922.1.1.179 alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › bMERB_dom 0.67 56.0 3.95e-01 96.3% 75.6%
3864929 192.29.1.1 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB_dom 0.66 52.0 4.58e-01 88.9% 67.1%
3768858 192.29.1.1 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB_dom 0.66 51.0 4.35e-01 87.0% 55.8%
5048467 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 51.0 3.84e-01 90.7% 41.4%
3952446 5055.1.1.0 extended segments › Small-conductance potassium channel › Small-conductance potassium channel › Small-conductance potassium channel 0.64 48.0 4.57e-01 83.3% 78.5%
3928718 5086.1.1.0 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.64 52.0 3.93e-01 92.6% 41.4%
5016953 3291.1.1.0 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.64 50.0 3.66e-01 88.9% 35.6%
4116779 603.1.1.174 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › HisKA 0.62 49.0 4.55e-01 92.6% 73.3%
4946656 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.61 48.0 3.84e-01 90.7% 98.3%
5003022 219.1.1.13 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core 0.61 45.0 2.92e-01 79.6% 52.5%
3384318 601.33.1.0 alpha bundles › Four-helical up-and-down bundle › CHAD domain › CHAD domain 0.57 45.0 4.11e-01 87.0% 73.3%
3768534 109.4.1.1504 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF26103 0.56 44.0 2.96e-01 90.7% 21.3%