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OK040171.1__UAV84631.1__PHB09_136__00135
Bact-VirOK040171.1__UAV84631.1__PHB09_136__00135
Identity
- Accession:
- OK040171 ↗
- Kingdom:
- phage
Quality
88.4
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Vandenendeviridae›
Dilongvirus›
Pseudomonas_phage_PHB09
TaxID: 2867265
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 12-73
Domain cluster:
representative
CATH (28)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1j2vA00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.64 | 49.0 | 4.15e-01 | 100.0% | 50.5% |
| 3cnvA01 | 3.40.1410.10 | Alpha Beta › 3-Layer(aba) Sandwich › Chorismate lyase › Chorismate lyase-like | 0.63 | 41.0 | 3.12e-01 | 79.0% | 26.5% |
| 4fvmA02 | 3.30.70.2820 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.63 | 52.0 | 4.46e-01 | 100.0% | 57.3% |
| 2oz4A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.62 | 39.0 | 3.40e-01 | 100.0% | 40.2% |
| 4jxuA01 | 3.30.470.10 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Aminotransferase class 4, branched-chain amino acid transferase, N-terminal domain | 0.60 | 51.0 | 4.14e-01 | 100.0% | 90.7% |
| 2cz4A00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.60 | 45.0 | 3.89e-01 | 100.0% | 51.5% |
| 3v8oA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.59 | 38.0 | 3.32e-01 | 100.0% | 41.2% |
| 2ek0A00 | 3.30.110.20 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain | 0.59 | 50.0 | 4.42e-01 | 100.0% | 64.4% |
| 4qclA02 | 3.30.70.2820 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.59 | 51.0 | 4.28e-01 | 100.0% | 64.9% |
| 6iq1A00 | 3.30.428.10 | Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › HIT-like | 0.59 | 52.0 | 3.98e-01 | 100.0% | 49.7% |
| 2ychA02 | 3.30.1490.300 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › | 0.58 | 47.0 | 4.82e-01 | 100.0% | 93.3% |
| 1ok8A03 | 3.30.387.10 | Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 3 › Viral Envelope Glycoprotein, domain 3 | 0.58 | 41.0 | 3.80e-01 | 100.0% | 58.0% |
| 2ebeA00 | 3.30.70.2290 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Protein of unknown function (DUF3208) | 0.57 | 45.0 | 3.85e-01 | 100.0% | 51.9% |
| 8cwoF01 | 3.30.70.60 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B | 0.57 | 46.0 | 4.15e-01 | 100.0% | 63.3% |
| 7oocE01 | 3.30.70.60 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B | 0.57 | 44.0 | 4.09e-01 | 100.0% | 67.1% |
| 5tkwA01 | 3.30.420.380 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › | 0.56 | 40.0 | 3.07e-01 | 100.0% | 29.4% |
| 4hvzA02 | 3.30.70.2970 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Protein of unknown function (DUF541), domain 2 | 0.55 | 46.0 | 3.93e-01 | 100.0% | 64.3% |
| 1xcjA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.55 | 47.0 | 3.27e-01 | 100.0% | 29.3% |
| 6wubf01 | 3.30.70.60 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B | 0.55 | 47.0 | 4.16e-01 | 100.0% | 64.9% |
| 2x3gA00 | 3.30.70.1910 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 40.0 | 3.33e-01 | 100.0% | 42.2% |
| 1mwqA00 | 3.30.70.1060 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Dimeric alpha+beta barrel | 0.54 | 34.0 | 2.94e-01 | 74.2% | 39.0% |
| 1iq4A00 | 3.30.1440.10 | Alpha Beta › 2-Layer Sandwich › 50s Ribosomal Protein L5; Chain: A, › Ribosomal protein L5 | 0.54 | 41.0 | 3.05e-01 | 87.1% | 88.8% |
| 1wxaA00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.53 | 44.0 | 3.75e-01 | 100.0% | 80.2% |
| 5iu1B00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.52 | 44.0 | 3.74e-01 | 100.0% | 89.3% |
| 2vfrA04 | 3.30.70.2520 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 43.0 | 3.81e-01 | 100.0% | 62.8% |
| 1obbA00 | 3.90.1820.10 | Alpha Beta › Alpha-Beta Complex › LDH C-terminal domain-like › AglA-like glucosidase | 0.52 | 36.0 | 2.18e-01 | 74.2% | 29.5% |
| 4qdgA02 | 2.60.40.2090 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.52 | 40.0 | 3.23e-01 | 88.7% | 40.7% |
| 5u89A02 | 3.30.559.10 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain | 0.50 | 38.0 | 2.93e-01 | 87.1% | 58.4% |
ECOD (37)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3633079 | 220.1.1.194 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_2nd_LRR | 0.66 | 51.0 | 3.72e-01 | 83.9% | 34.1% |
| 4629319 | 304.55.1.13 ↗ | a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › Relaxase | 0.64 | 48.0 | 3.95e-01 | 100.0% | 43.3% |
| 3929632 | 304.126.1.1 ↗ | a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C › V_ATPase_I | 0.64 | 50.0 | 4.18e-01 | 85.5% | 76.2% |
| 3702503 | 304.114.1.0 ↗ | a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain | 0.63 | 53.0 | 4.76e-01 | 100.0% | 65.6% |
| 3413150 | 4969.1.1.0 ↗ | alpha bundles › thumb domain in bacteriophage RB69-like DNA polymerase I › thumb domain in bacteriophage RB69-like DNA polymerase I › thumb domain in bacteriophage RB69-like DNA polymerase I | 0.62 | 55.0 | 4.75e-01 | 100.0% | 74.0% |
| 1824495 | 2484.1.1.61 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PilM_2 | 0.61 | 48.0 | 3.54e-01 | 100.0% | 30.9% |
| 4809499 | 304.109.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e | 0.60 | 49.0 | 4.54e-01 | 100.0% | 68.2% |
| 3784198 | 304.114.1.0 ↗ | a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain | 0.60 | 53.0 | 4.47e-01 | 100.0% | 68.6% |
| 5018724 | 872.3.1.0 ↗ | a+b two layers › Dodecin subunit-like › YbjQ-like › YbjQ-like | 0.59 | 52.0 | 4.53e-01 | 100.0% | 96.8% |
| 3762458 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.59 | 52.0 | 4.48e-01 | 100.0% | 72.0% |
| 1878708 | 304.114.1.0 ↗ | a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain | 0.59 | 51.0 | 4.47e-01 | 100.0% | 73.5% |
| 3553551 | 4969.1.1.0 ↗ | alpha bundles › thumb domain in bacteriophage RB69-like DNA polymerase I › thumb domain in bacteriophage RB69-like DNA polymerase I › thumb domain in bacteriophage RB69-like DNA polymerase I | 0.59 | 51.0 | 4.49e-01 | 100.0% | 75.8% |
| 3649941 | 4020.1.1.0 ↗ | a+b two layers › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes | 0.58 | 50.0 | 3.97e-01 | 100.0% | 97.8% |
| 3592296 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.58 | 43.0 | 3.50e-01 | 80.6% | 41.7% |
| 5018729 | 302.4.1.0 ↗ | a+b two layers › Reverse ferredoxin › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › a+b domain in Acetophenone carboxylase (Apc) alpha subunit | 0.58 | 49.0 | 4.17e-01 | 100.0% | 85.5% |
| 3599724 | 101.1.2.236 ↗ | alpha arrays › HTH › HTH › winged helix domain › POLR3C_WHD | 0.58 | 42.0 | 3.27e-01 | 80.6% | 49.0% |
| 3405388 | 101.1.2.664 ↗ | alpha arrays › HTH › HTH › winged helix domain › B-block_TFIIIC, WH_GTF3C1_N | 0.57 | 46.0 | 2.78e-01 | 100.0% | 13.3% |
| 1892335 | 2484.1.1.47 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › T2SSL | 0.57 | 40.0 | 3.17e-01 | 100.0% | 32.2% |
| 4994628 | 328.9.1.0 ↗ | a+b two layers › IF3-like › SepF C-terminal domain › SepF C-terminal domain | 0.57 | 47.0 | 4.18e-01 | 100.0% | 63.3% |
| 3280095 | 11.1.1.130 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Inhibitor_I42 | 0.57 | 43.0 | 3.68e-01 | 100.0% | 49.5% |
| 4945814 | 2011.1.1.8 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M28 | 0.56 | 42.0 | 2.80e-01 | 88.7% | 79.4% |
| 2093009 | 304.12.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 › Ribosomal_S6 | 0.55 | 44.0 | 3.96e-01 | 100.0% | 61.5% |
| 3958843 | 304.28.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain | 0.55 | 45.0 | 3.90e-01 | 100.0% | 56.2% |
| 4201083 | 304.12.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 › Ribosomal_S6 | 0.55 | 46.0 | 4.01e-01 | 100.0% | 60.0% |
| 3279814 | 304.28.1.16 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › AtuA | 0.55 | 45.0 | 3.77e-01 | 100.0% | 51.3% |
| 4345620 | 328.6.1.1 ↗ | a+b two layers › IF3-like › EPT/RTPC-like › EPT/RTPC-like › EPSP_synthase | 0.54 | 45.0 | 3.13e-01 | 98.4% | 35.3% |
| 4585065 | 2003.1.5.20 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › MethyltransfD12 | 0.54 | 43.0 | 2.50e-01 | 100.0% | 9.0% |
| 4025703 | 304.12.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 › Ribosomal_S6 | 0.54 | 46.0 | 3.86e-01 | 100.0% | 55.5% |
| 5010396 | 131.1.1.3 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD | 0.54 | 40.0 | 2.56e-01 | 87.1% | 34.9% |
| 3440141 | 3012.1.1.11 ↗ | a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain › PF27677 | 0.54 | 44.0 | 3.82e-01 | 100.0% | 58.0% |
| 5022734 | 304.51.1.0 ↗ | a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related | 0.53 | 46.0 | 3.09e-01 | 100.0% | 76.9% |
| 4671096 | 304.4.1.54 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › Amnionless | 0.53 | 44.0 | 3.60e-01 | 100.0% | 47.7% |
| 3959045 | 305.1.1.0 ↗ | a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase | 0.52 | 43.0 | 3.61e-01 | 100.0% | 55.0% |
| 3393710 | 304.9.1.95 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › DUF4780 | 0.51 | 43.0 | 3.83e-01 | 100.0% | 65.3% |
| 3638463 | 210.1.3.5 ↗ | a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 | 0.51 | 40.0 | 2.73e-01 | 91.9% | 69.8% |
| 3927211 | 206.1.1.20 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr | 0.50 | 44.0 | 2.81e-01 | 100.0% | 19.7% |
| 4012733 | 323.1.1.0 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases | 0.50 | 38.0 | 2.66e-01 | 83.9% | 46.2% |