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OK040790.1__UDL15850.1__SEA_PUMPERNICKEL_59__00059
Bact-VirOK040790.1__UDL15850.1__SEA_PUMPERNICKEL_59__00059
Identity
- Accession:
- OK040790 ↗
- Kingdom:
- phage
Quality
80.4
mean pLDDT
Taxonomy
TaxID: 2885983
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-110
Domain cluster:
rep: MN586021.1__QGJ92824.1__PBI_BEAGLE_65__00065__D8-101
D2
high
residues 120-164
Domain cluster:
representative
CATH (37)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3sfvB02 | 6.10.140.2010 | Special › Helix non-globular › Helix Hairpins › | 0.94 | 87.0 | 5.48e-01 | 100.0% | 23.5% |
| 1nt2B02 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.91 | 82.0 | 7.13e-01 | 100.0% | 73.1% |
| 2hh7A00 | 1.20.58.1000 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Metal-sensitive repressor, helix protomer | 0.91 | 82.0 | 6.55e-01 | 100.0% | 58.8% |
| 2rkhA02 | 1.20.1280.20 | Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain | 0.90 | 84.0 | 6.87e-01 | 100.0% | 60.5% |
| 3rq9A00 | 1.10.287.2500 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.89 | 81.0 | 6.63e-01 | 100.0% | 57.7% |
| 4fxdA04 | 3.90.1600.10 | Alpha Beta › Alpha-Beta Complex › Palm domain of DNA polymerase › B family DNA polymerase, palm domain | 0.88 | 81.0 | 5.45e-01 | 100.0% | 37.9% |
| 1o9gA02 | 1.10.287.540 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.86 | 71.0 | 7.28e-01 | 100.0% | 97.7% |
| 4dmvA01 | 1.20.58.1190 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.86 | 75.0 | 6.04e-01 | 97.8% | 52.9% |
| 1t7sA00 | 1.20.58.120 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain | 0.84 | 74.0 | 5.29e-01 | 100.0% | 36.4% |
| 2gv9A05 | 1.10.287.690 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain | 0.84 | 76.0 | 6.87e-01 | 100.0% | 76.3% |
| 5jrcA00 | 1.20.58.2140 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.82 | 70.0 | 4.60e-01 | 100.0% | 23.7% |
| 1qsdA00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.81 | 64.0 | 4.88e-01 | 86.7% | 39.2% |
| 4errB00 | 1.20.58.1190 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.81 | 70.0 | 5.75e-01 | 100.0% | 57.8% |
| 4didB01 | 1.20.58.450 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Cell division control protein 42 homolog | 0.81 | 64.0 | 4.76e-01 | 97.8% | 35.1% |
| 8b6jF01 | 1.10.287.20 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Ubiquinol-cytochrome C reductase hinge domain | 0.79 | 64.0 | 5.72e-01 | 100.0% | 62.7% |
| 6tkvA01 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.79 | 67.0 | 5.93e-01 | 100.0% | 67.6% |
| 8jx6A02 | 2.30.30.780 | Mainly Beta › Roll › SH3 type barrels. › | 0.77 | 60.0 | 4.70e-01 | 100.0% | 39.8% |
| 1iurA01 | 1.10.287.110 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain | 0.76 | 64.0 | 5.75e-01 | 100.0% | 68.3% |
| 2i7uA00 | 6.10.250.1010 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.76 | 62.0 | 5.78e-01 | 100.0% | 83.9% |
| 4kb2A01 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.75 | 65.0 | 4.96e-01 | 100.0% | 41.3% |
| 3hr0B01 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.75 | 62.0 | 5.30e-01 | 100.0% | 73.4% |
| 1m5iA00 | 1.10.287.450 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.73 | 59.0 | 4.70e-01 | 100.0% | 99.0% |
| 2j5iA02 | 6.10.250.2850 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.71 | 49.0 | 5.21e-01 | 100.0% | 84.2% |
| 2l3lA01 | 1.20.58.1250 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Tubulin Binding Cofactor C, N-terminal domain | 0.71 | 57.0 | 4.52e-01 | 100.0% | 43.4% |
| 4myzC00 | 6.10.250.3430 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.68 | 42.0 | 4.06e-01 | 84.4% | 54.9% |
| 4di1C02 | 1.10.12.10 | Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 | 0.68 | 54.0 | 5.65e-01 | 95.6% | 100.0% |
| 3c5iA02 | 3.90.1200.10 | Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe | 0.67 | 54.0 | 3.44e-01 | 100.0% | 17.1% |
| 3besR03 | 6.10.140.1480 | Special › Helix non-globular › Helix Hairpins › | 0.65 | 56.0 | 5.27e-01 | 97.8% | 87.5% |
| 2wmmA01 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.64 | 53.0 | 5.20e-01 | 97.8% | 87.8% |
| 3h4cA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.64 | 54.0 | 4.19e-01 | 93.3% | 43.8% |
| 4qfeK02 | 1.10.287.2460 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.63 | 42.0 | 4.52e-01 | 73.3% | 91.2% |
| 2khmA01 | 1.10.10.1350 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Spidroin domain, C-terminal domain | 0.62 | 55.0 | 4.16e-01 | 100.0% | 56.5% |
| 2w02B01 | 1.10.150.640 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › AcsD, thumb domain, helical bundle | 0.62 | 54.0 | 4.61e-01 | 100.0% | 83.8% |
| 4jvtA02 | 1.10.12.10 | Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 | 0.62 | 46.0 | 4.77e-01 | 88.9% | 97.6% |
| 2xkoC02 | 6.10.250.870 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.60 | 42.0 | 4.44e-01 | 77.8% | 94.6% |
| 4jylA02 | 1.10.12.10 | Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 | 0.59 | 45.0 | 4.50e-01 | 97.8% | 93.9% |
| 3h5tA01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.58 | 42.0 | 4.21e-01 | 77.8% | 85.1% |
ECOD (38)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4943086 | 192.7.1.0 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm | 0.96 | 90.0 | 7.55e-01 | 100.0% | 64.3% |
| 3614667 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.96 | 89.0 | 5.14e-01 | 100.0% | 13.0% |
| 3336158 | 70.3.1.0 ↗ | beta barrels › beta-clip › SET domain-like › SET domain-like | 0.95 | 88.0 | 5.90e-01 | 100.0% | 30.4% |
| 3218879 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.94 | 88.0 | 7.86e-01 | 100.0% | 75.0% |
| 3283655 | 3812.1.1.0 ↗ | alpha bundles › Type III secretion protein YscE › Type III secretion protein YscE › Type III secretion protein YscE | 0.93 | 87.0 | 8.39e-01 | 100.0% | 96.0% |
| 4951184 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.93 | 87.0 | 8.34e-01 | 100.0% | 90.0% |
| 5012794 | 4333.1.1.0 ↗ | a+b complex topology › DNA methylase specificity domain › DNA methylase specificity domain › DNA methylase specificity domain | 0.92 | 85.0 | 4.88e-01 | 100.0% | 12.7% |
| 3595146 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.92 | 81.0 | 8.14e-01 | 95.6% | 95.6% |
| 3699638 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.92 | 83.0 | 4.52e-01 | 100.0% | 6.9% |
| 3708191 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.91 | 84.0 | 6.93e-01 | 100.0% | 60.0% |
| 4984327 | 192.7.1.2 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N | 0.91 | 83.0 | 6.15e-01 | 100.0% | 42.9% |
| 5012084 | 304.48.1.3 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › DNA_pol_B | 0.90 | 83.0 | 5.14e-01 | 100.0% | 26.7% |
| 3670053 | 603.1.1.107 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Mlo | 0.90 | 81.0 | 6.38e-01 | 100.0% | 54.4% |
| 3466539 | 632.7.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain | 0.90 | 80.0 | 6.79e-01 | 97.8% | 62.9% |
| 3527434 | 6006.1.1.6 ↗ | extended segments › Voltage gated calcium channel IQ domain › Voltage gated calcium channel IQ domain › Voltage gated calcium channel IQ domain › PF27661 | 0.90 | 81.0 | 5.42e-01 | 100.0% | 31.6% |
| 148414 | 605.4.1.2 ↗ | alpha duplicates or obligate multimers › ROP-like › ROP protein › ROP protein › SCAB_CC | 0.89 | 77.0 | 7.54e-01 | 100.0% | 87.8% |
| 4941665 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.89 | 79.0 | 6.84e-01 | 100.0% | 65.2% |
| 3989466 | 1075.1.2.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain › FtsX | 0.89 | 79.0 | 4.31e-01 | 100.0% | 7.3% |
| 4949374 | 616.1.1.0 ↗ | alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain | 0.87 | 78.0 | 6.88e-01 | 100.0% | 69.2% |
| 3482751 | 192.1.1.0 ↗ | alpha bundles › Long alpha-hairpin › GreA transcript cleavage protein, N-terminal domain › GreA transcript cleavage protein, N-terminal domain | 0.87 | 78.0 | 6.87e-01 | 100.0% | 69.2% |
| 4461237 | 4967.1.1.0 ↗ | alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases | 0.85 | 76.0 | 4.26e-01 | 100.0% | 27.0% |
| 3180581 | 192.8.1.0 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain | 0.85 | 71.0 | 5.72e-01 | 100.0% | 49.4% |
| 4056724 | 192.6.1.0 ↗ | alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain | 0.85 | 69.0 | 6.90e-01 | 91.1% | 91.1% |
| 1172174 | 221.8.1.2 ↗ | a+b two layers › beta-Grasp › GfcC › GfcC › Caps_syn_GfcC_N | 0.84 | 65.0 | 4.64e-01 | 91.1% | 30.4% |
| 3962893 | 150.5.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like | 0.84 | 73.0 | 5.71e-01 | 100.0% | 100.0% |
| 1821875 | 4970.1.1.1 ↗ | alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › DNA_pol_B | 0.82 | 75.0 | 6.78e-01 | 100.0% | 76.3% |
| 222846 | 150.5.1.1 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like › WXG100 | 0.80 | 68.0 | 5.47e-01 | 100.0% | 49.5% |
| 3981105 | 221.8.1.2 ↗ | a+b two layers › beta-Grasp › GfcC › GfcC › Caps_syn_GfcC_N | 0.77 | 68.0 | 4.86e-01 | 97.8% | 52.8% |
| 3697208 | 604.7.1.0 ↗ | alpha bundles › Spectrin repeat-like › Tubulin chaperone cofactor A › Tubulin chaperone cofactor A | 0.76 | 63.0 | 4.69e-01 | 100.0% | 58.4% |
| 3180974 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.76 | 64.0 | 6.08e-01 | 100.0% | 83.6% |
| 3506685 | 1134.1.1.0 ↗ | alpha bundles › C-terminal helical domain of alanine-tRNA ligase › C-terminal helical domain of alanine-tRNA ligase › Eukaryotic C-Ala helical domain | 0.75 | 62.0 | 5.40e-01 | 100.0% | 60.0% |
| 4026563 | 4320.1.1.0 ↗ | alpha superhelices › Taf5 N-terminal domain-like › Taf5 N-terminal domain-like › Taf5 N-terminal domain-like | 0.75 | 62.0 | 4.42e-01 | 100.0% | 30.7% |
| 3646879 | 304.48.1.0 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like | 0.75 | 60.0 | 4.22e-01 | 95.6% | 26.9% |
| 3824583 | 310.2.1.1 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › RRF | 0.73 | 65.0 | 4.26e-01 | 100.0% | 34.2% |
| 3552520 | 241.15.1.3 ↗ | a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain › SPC25 | 0.72 | 57.0 | 5.32e-01 | 100.0% | 70.8% |
| 5036519 | 5052.1.1.0 ↗ | alpha complex topology › Proton glutamate symport protein › Proton glutamate symport protein › Proton glutamate symport protein | 0.71 | 58.0 | 3.59e-01 | 100.0% | 15.5% |
| 4148010 | 632.1.1.24 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain › DAGK_prokar | 0.66 | 52.0 | 4.03e-01 | 100.0% | 36.8% |
| 1118611 | 103.9.1.1 ↗ | alpha arrays › RuvA-C › RanGAP2 N-terminal domain › RanGAP2 N-terminal domain › WPP | 0.61 | 53.0 | 4.28e-01 | 100.0% | 52.8% |