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OK040790.1__UDL15862.1__SEA_PUMPERNICKEL_71__00071

Bact-Vir

OK040790.1__UDL15862.1__SEA_PUMPERNICKEL_71__00071

Identity

Accession:
OK040790 ↗
Kingdom:
phage

Quality

69.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pumpernickelvirus› Microbacterium_phage_Pumpernickel

TaxID: 2885983

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-74
PDB
Domain cluster: representative
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6j95A01 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.63 51.0 3.15e-01 87.7% 16.7%
3pbkA02 3.30.300.30 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain 0.63 29.0 2.53e-01 84.9% 30.6%
2iqcA00 1.25.40.490 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.61 43.0 3.31e-01 82.2% 31.2%
2ntxA01 1.20.58.2010 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › PRONE domain, subdomain 1 0.58 46.0 3.32e-01 86.3% 30.0%
4f9cA02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.56 46.0 3.35e-01 90.4% 84.2%
4fx5A03 1.20.120.1690 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.55 46.0 4.16e-01 91.8% 97.0%
1gngA02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.54 43.0 2.97e-01 86.3% 40.9%
7aqbB02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.52 40.0 2.98e-01 84.9% 46.9%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3228986 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.69 59.0 3.84e-01 94.5% 22.3%
3582740 5001.1.1.7 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Frizzled 0.67 59.0 4.15e-01 97.3% 39.5%
5017920 5054.1.1.2 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans 0.66 48.0 3.24e-01 79.5% 20.7%
3992156 109.4.1.2569 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RasGEF_N_2, RICTOR_M, RICTOR_V 0.66 43.0 2.72e-01 86.3% 12.7%
3274487 605.1.1.155 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › Gpi1 0.65 54.0 4.02e-01 90.4% 37.1%
3199801 5001.1.1.144 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Choline_transpo 0.64 53.0 3.26e-01 89.0% 15.7%
3399010 5059.1.1.5 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › UAA 0.63 51.0 3.32e-01 89.0% 38.4%
None — 0.62 49.0 4.14e-01 86.3% 51.7%
3391391 4177.1.1.16 ↗ alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › FAP206 0.62 54.0 3.55e-01 100.0% 22.7%
4309086 5056.1.1.1 ↗ extended segments › Gated mechanosensitive channel › Gated mechanosensitive channel › Gated mechanosensitive channel › MscL 0.62 50.0 3.76e-01 86.3% 54.5%
3669948 109.4.1.1495 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF26522 0.59 40.0 2.34e-01 78.1% 7.7%
3628118 5051.1.1.6 ↗ alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Aa_trans 0.59 54.0 3.35e-01 100.0% 66.2%
3641227 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.57 42.0 4.23e-01 84.9% 78.7%
3392962 7514.1.1.3 ↗ a/b three-layered sandwiches › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › NAD_binding_6 0.57 43.0 3.17e-01 82.2% 62.4%
3497542 626.1.1.1 ↗ alpha complex topology › Formin homology 2 domain (FH2 domain) › Formin homology 2 domain (FH2 domain) › Formin homology 2 domain (FH2 domain) › FH2 0.57 49.0 3.14e-01 100.0% 31.8%
3710958 1128.1.1.0 ↗ alpha bundles › LYR protein › LYR protein › LYR protein 0.56 38.0 3.52e-01 80.8% 54.7%
3357520 310.2.1.28 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › Myb_DNA-bind_3 0.54 39.0 3.78e-01 78.1% 74.1%
3949819 101.1.2.200 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_65 0.53 23.0 2.56e-01 91.8% 50.0%
5045777 205.1.1.0 ↗ a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin 0.52 25.0 2.61e-01 78.1% 38.6%
5001950 266.1.1.1 ↗ a+b two layers › Thymidylate synthase/dCMP hydroxymethylase › Thymidylate synthase/dCMP hydroxymethylase › Thymidylate synthase/dCMP hydroxymethylase › Thymidylat_synt 0.52 36.0 2.61e-01 75.3% 69.5%
151381 604.16.1.2 ↗ alpha bundles › Spectrin repeat-like › Hypothetical membrane protein Ta0354, soluble domain › Hypothetical membrane protein Ta0354, soluble domain › VWA_3_C 0.51 31.0 3.51e-01 74.0% 84.9%
3932494 101.1.17.5 ↗ alpha arrays › HTH › HTH › FF domain › Rab3-GTPase_cat 0.51 37.0 3.15e-01 78.1% 76.8%