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OK040790.1__UDL16010.1__SEA_PUMPERNICKEL_260__00219
Bact-VirOK040790.1__UDL16010.1__SEA_PUMPERNICKEL_260__00219
Identity
- Accession:
- OK040790 ↗
- Kingdom:
- phage
Quality
79.9
mean pLDDT
Taxonomy
TaxID: 2885983
Cluster
View cluster (66 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-160
Domain cluster:
rep: KF356198.1__AGR48546.1__A4L_19__00019__D1-101_186-205
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00929.32 best | RNase_T | 50.4 | 5.50e-13 | 97.5% | 100.0% |
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1j54A00 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.86 | 82.0 | 7.90e-01 | 100.0% | 98.9% |
| 4qozB02 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.86 | 82.0 | 7.13e-01 | 100.0% | 82.0% |
| 2qxfA01 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.85 | 81.0 | 7.51e-01 | 100.0% | 95.8% |
| 4fzxC00 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.84 | 77.0 | 7.57e-01 | 100.0% | 90.3% |
| 2p1jA01 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.84 | 70.0 | 7.50e-01 | 86.6% | 99.3% |
| 7wrnA01 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.83 | 78.0 | 7.13e-01 | 100.0% | 92.9% |
| 2gv9A03 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.74 | 70.0 | 6.12e-01 | 100.0% | 99.1% |
| 3iayA03 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.73 | 70.0 | 6.19e-01 | 100.0% | 98.1% |
| 2qi2A02 | 3.30.420.60 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › eRF1 domain 2 | 0.62 | 42.0 | 4.84e-01 | 100.0% | 94.7% |
| 2qkdA03 | 2.20.25.420 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain | 0.58 | 21.0 | 3.53e-01 | 94.3% | 100.0% |
| 6pxcA00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.55 | 28.0 | 3.34e-01 | 72.6% | 72.1% |
| 3ge2A00 | 2.40.128.50 | Mainly Beta › Beta Barrel › Lipocalin › | 0.54 | 26.0 | 3.40e-01 | 72.0% | 79.8% |
| 3cetB01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.54 | 37.0 | 4.33e-01 | 80.9% | 100.0% |
| 2zgyA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.52 | 47.0 | 4.56e-01 | 98.7% | 99.4% |
ECOD (62)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3587075 | 2484.1.1.13 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T | 0.91 | 89.0 | 8.59e-01 | 100.0% | 93.5% |
| 4031781 | 2484.1.1.13 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T | 0.91 | 88.0 | 8.31e-01 | 100.0% | 87.2% |
| 4034216 | 2484.1.1.13 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T | 0.90 | 87.0 | 7.94e-01 | 100.0% | 82.1% |
| 4216340 | 2484.1.1.13 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T | 0.89 | 85.0 | 7.85e-01 | 100.0% | 88.6% |
| 4103309 | 2484.1.1.13 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T | 0.89 | 85.0 | 7.57e-01 | 100.0% | 77.1% |
| 3280151 | 2484.1.1.13 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T | 0.88 | 84.0 | 7.88e-01 | 100.0% | 88.1% |
| 4640906 | 2484.1.1.13 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T | 0.87 | 84.0 | 7.70e-01 | 100.0% | 81.5% |
| 3279532 | 2484.1.1.13 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T | 0.87 | 84.0 | 7.76e-01 | 100.0% | 90.0% |
| 4586442 | 2484.1.1.13 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T | 0.87 | 84.0 | 7.31e-01 | 100.0% | 73.2% |
| 3272730 | 2484.1.1.13 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T | 0.87 | 84.0 | 7.70e-01 | 100.0% | 84.5% |
| 3942728 | 2484.1.1.13 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T | 0.87 | 84.0 | 7.43e-01 | 100.0% | 78.1% |
| 3615656 | 2484.1.1.13 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T | 0.87 | 83.0 | 7.32e-01 | 100.0% | 84.7% |
| 5081840 | 2484.1.1.13 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T | 0.87 | 83.0 | 7.43e-01 | 100.0% | 80.8% |
| 3549895 | 2484.1.1.13 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T | 0.87 | 83.0 | 7.18e-01 | 100.0% | 82.2% |
| 3947357 | 2484.1.1.13 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T | 0.87 | 83.0 | 7.85e-01 | 100.0% | 92.3% |
| 4672299 | 2484.1.1.13 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T | 0.86 | 83.0 | 7.60e-01 | 100.0% | 88.7% |
| 3378450 | 2484.1.1.13 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T | 0.86 | 82.0 | 7.08e-01 | 100.0% | 78.7% |
| 3839669 | 2484.1.1.13 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T | 0.86 | 83.0 | 6.79e-01 | 100.0% | 60.8% |
| 4033087 | 2484.1.1.13 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T | 0.86 | 83.0 | 7.22e-01 | 100.0% | 72.7% |
| 4298195 | 2484.1.1.13 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T | 0.86 | 83.0 | 7.50e-01 | 100.0% | 80.0% |
| 3988496 | 2484.1.1.13 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T | 0.86 | 83.0 | 7.28e-01 | 100.0% | 73.5% |
| 3957139 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.86 | 82.0 | 7.46e-01 | 100.0% | 79.5% |
| 4037317 | 2484.1.1.13 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T | 0.86 | 82.0 | 7.37e-01 | 100.0% | 78.0% |
| 3953516 | 2484.1.1.13 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T | 0.86 | 82.0 | 7.54e-01 | 100.0% | 81.5% |
| 4176714 | 2484.1.1.13 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T | 0.86 | 82.0 | 7.37e-01 | 100.0% | 80.4% |
| 4052322 | 2484.1.1.13 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T | 0.86 | 82.0 | 7.57e-01 | 100.0% | 85.3% |
| 4432985 | 2484.1.1.13 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T | 0.86 | 82.0 | 7.42e-01 | 100.0% | 81.5% |
| 5081301 | 2484.1.1.13 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T | 0.85 | 81.0 | 5.89e-01 | 100.0% | 43.1% |
| 3088601 | 2484.1.1.13 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T | 0.85 | 81.0 | 7.87e-01 | 100.0% | 93.0% |
| 3971372 | 2484.1.1.13 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T | 0.85 | 81.0 | 7.46e-01 | 100.0% | 85.6% |
| 5007230 | 2484.1.1.13 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T | 0.85 | 81.0 | 7.47e-01 | 100.0% | 84.6% |
| 3733253 | 2484.1.1.13 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T | 0.85 | 81.0 | 6.76e-01 | 100.0% | 83.2% |
| 3963965 | 2484.1.1.13 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T | 0.85 | 81.0 | 7.78e-01 | 100.0% | 96.6% |
| 3945113 | 2484.1.1.13 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T | 0.85 | 81.0 | 7.67e-01 | 100.0% | 93.3% |
| 3502270 | 2484.1.1.13 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T | 0.85 | 77.0 | 7.53e-01 | 100.0% | 87.6% |
| 3719456 | 2484.1.1.13 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T | 0.85 | 80.0 | 7.25e-01 | 100.0% | 87.3% |
| 3993235 | 2484.1.1.13 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T | 0.84 | 80.0 | 7.06e-01 | 100.0% | 88.4% |
| 3528742 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.84 | 79.0 | 7.03e-01 | 100.0% | 85.6% |
| 4505558 | 2484.1.1.13 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T | 0.83 | 79.0 | 7.12e-01 | 100.0% | 89.8% |
| 3988431 | 2484.1.1.13 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T | 0.83 | 79.0 | 7.52e-01 | 100.0% | 88.3% |
| 4959338 | 2484.1.1.13 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T | 0.83 | 79.0 | 7.42e-01 | 100.0% | 94.1% |
| 3555211 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.83 | 78.0 | 7.05e-01 | 100.0% | 89.8% |
| 4102293 | 2484.1.1.13 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T | 0.80 | 76.0 | 7.06e-01 | 100.0% | 86.3% |
| 3781214 | 2484.1.1.90 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DEDDh_C | 0.78 | 74.0 | 6.29e-01 | 100.0% | 69.7% |
| 3742269 | 2484.1.1.90 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DEDDh_C | 0.77 | 73.0 | 6.68e-01 | 100.0% | 83.0% |
| 3788482 | 2484.1.1.90 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DEDDh_C | 0.76 | 71.0 | 5.98e-01 | 100.0% | 71.0% |
| 4931271 | 2484.1.1.68 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_H_2 | 0.75 | 72.0 | 6.39e-01 | 100.0% | 78.6% |
| 5023018 | 2484.1.1.34 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 | 0.75 | 70.0 | 6.27e-01 | 98.7% | 97.6% |
| 4933243 | 2484.1.1.68 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_H_2 | 0.74 | 70.0 | 6.75e-01 | 100.0% | 93.7% |
| 4492006 | 2484.1.1.34 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 | 0.73 | 70.0 | 5.69e-01 | 100.0% | 65.2% |
| 4982659 | 2484.1.1.34 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 | 0.73 | 70.0 | 5.22e-01 | 100.0% | 51.4% |
| 5080048 | 2484.1.1.68 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_H_2 | 0.72 | 68.0 | 6.52e-01 | 100.0% | 96.6% |
| 4378664 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.66 | 62.0 | 5.16e-01 | 100.0% | 81.5% |
| 4979608 | 2484.1.1.38 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › eRF1_2 | 0.63 | 47.0 | 5.18e-01 | 100.0% | 96.0% |
| 3934453 | 214.1.1.0 ↗ | a+b two layers › SH2 › SH2 › SH2 | 0.63 | 30.0 | 3.46e-01 | 98.7% | 60.9% |
| 4947406 | 2484.4.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Nitrogenase accessory factor-like › Nitrogenase accessory factor-like | 0.59 | 40.0 | 4.56e-01 | 100.0% | 93.0% |
| 4314343 | 2484.1.1.38 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › eRF1_2 | 0.59 | 43.0 | 4.66e-01 | 100.0% | 90.8% |
| 1148160 | 2484.1.1.23 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Hydantoinase_A | 0.57 | 39.0 | 4.50e-01 | 99.4% | 98.2% |
| 4414942 | 2484.1.1.25 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvC | 0.56 | 49.0 | 4.94e-01 | 100.0% | 95.6% |
| 5010128 | 2484.1.1.67 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 | 0.54 | 42.0 | 4.34e-01 | 92.4% | 87.2% |
| 5075668 | 2007.1.5.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › ATC-like › CCG | 0.52 | 44.0 | 3.69e-01 | 90.4% | 89.3% |
| 5053021 | 4252.1.1.0 ↗ | beta barrels › AttH-like › AttH-like › AttH-like | 0.51 | 25.0 | 3.26e-01 | 93.0% | 81.1% |