←Back to structures

OK040790.1__UDL16013.1__SEA_PUMPERNICKEL_263__00222

Bact-Vir

OK040790.1__UDL16013.1__SEA_PUMPERNICKEL_263__00222

Identity

Accession:
OK040790 ↗
Kingdom:
phage

Quality

92.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pumpernickelvirus› Microbacterium_phage_Pumpernickel

TaxID: 2885983

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-96
PDB
Domain cluster: representative
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2da0A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 45.0 4.28e-01 100.0% 73.7%
4osnA00 2.30.29.100 Mainly Beta › Roll › PH-domain like › 0.54 48.0 4.58e-01 97.8% 97.3%
3f6zB01 2.40.128.200 Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor 0.53 40.0 4.29e-01 96.8% 94.9%
1qqgA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 47.0 4.54e-01 100.0% 93.2%
2gumB03 2.30.29.100 Mainly Beta › Roll › PH-domain like › 0.52 45.0 4.12e-01 95.7% 90.1%
2vb6A01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.52 28.0 3.42e-01 84.9% 87.0%
5itqA01 3.20.190.10 Alpha Beta › Alpha-Beta Barrel › N-terminal domain of MutM-like DNA repair proteins › MutM-like, N-terminal 0.51 41.0 3.73e-01 88.2% 86.4%
3fm8D03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 45.0 4.31e-01 100.0% 84.3%
2dfuA01 2.30.30.370 Mainly Beta › Roll › SH3 type barrels. › FAH 0.51 26.0 3.36e-01 96.8% 97.7%
ECOD (7)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4197125 3939.1.1.0 ↗ alpha duplicates or obligate multimers › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain 0.72 35.0 3.19e-01 84.9% 35.8%
4996362 220.1.1.87 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_3 0.63 53.0 5.03e-01 100.0% 76.9%
3620552 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.60 33.0 4.10e-01 100.0% 98.0%
3497026 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.59 53.0 4.34e-01 100.0% 90.0%
3914585 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.55 48.0 4.65e-01 100.0% 85.7%
3804742 220.1.1.189 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_SMPa 0.53 46.0 3.89e-01 100.0% 73.9%
3666104 5.1.5.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.51 37.0 2.58e-01 77.4% 84.1%