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OK040790.1__UDL16017.1__SEA_PUMPERNICKEL_267__00226

Bact-Vir

OK040790.1__UDL16017.1__SEA_PUMPERNICKEL_267__00226

Identity

Accession:
OK040790 ↗
Kingdom:
phage

Quality

64.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-51
PDB
Domain cluster: representative
CATH (45)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1txkB02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.80 69.0 5.20e-01 100.0% 46.1%
6b6lA05 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.73 63.0 4.86e-01 100.0% 53.2%
3gm8A05 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.72 63.0 4.80e-01 100.0% 52.7%
4nasB01 3.30.70.150 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RuBisCO large subunit, N-terminal domain 0.71 54.0 4.12e-01 85.1% 65.5%
8d7eC01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.67 51.0 4.34e-01 100.0% 48.8%
1m2vB02 2.60.40.1670 Mainly Beta › Sandwich › Immunoglobulin-like › beta-sandwich domain of Sec23/24 0.66 55.0 3.88e-01 100.0% 36.6%
4tw1B00 2.70.240.10 Mainly Beta › Distorted Sandwich › Leukocidin-like › Leukocidin/porin MspA 0.66 56.0 3.47e-01 100.0% 52.5%
2yx1A03 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.66 48.0 3.28e-01 78.7% 23.9%
3efoB03 2.60.40.1670 Mainly Beta › Sandwich › Immunoglobulin-like › beta-sandwich domain of Sec23/24 0.66 55.0 4.04e-01 100.0% 53.3%
1yukB01 2.60.40.1510 Mainly Beta › Sandwich › Immunoglobulin-like › ntegrin, alpha v. Chain A, domain 3 0.65 54.0 4.75e-01 100.0% 84.6%
2qdfA03 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.65 48.0 4.11e-01 78.7% 62.3%
1oj4A01 3.30.230.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.65 51.0 3.67e-01 95.7% 74.2%
3bvxA05 2.60.40.1360 Mainly Beta › Sandwich › Immunoglobulin-like › 0.64 54.0 4.29e-01 93.6% 57.3%
4a5wA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.64 54.0 4.30e-01 100.0% 57.1%
3ix9A00 3.40.430.10 Alpha Beta › 3-Layer(aba) Sandwich › Dihydrofolate Reductase, subunit A › Dihydrofolate Reductase, subunit A 0.64 44.0 3.02e-01 72.3% 28.3%
2w9hA00 3.40.430.10 Alpha Beta › 3-Layer(aba) Sandwich › Dihydrofolate Reductase, subunit A › Dihydrofolate Reductase, subunit A 0.63 43.0 3.01e-01 72.3% 28.0%
3m9qA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 49.0 4.37e-01 93.6% 93.1%
2nutB03 2.60.40.1670 Mainly Beta › Sandwich › Immunoglobulin-like › beta-sandwich domain of Sec23/24 0.61 51.0 3.81e-01 100.0% 45.1%
3pyfA01 3.30.230.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.60 48.0 3.46e-01 95.7% 75.5%
1ao8A00 3.40.430.10 Alpha Beta › 3-Layer(aba) Sandwich › Dihydrofolate Reductase, subunit A › Dihydrofolate Reductase, subunit A 0.60 42.0 2.90e-01 74.5% 28.4%
3ttyA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.60 40.0 3.77e-01 89.4% 53.2%
7mwzD01 3.40.50.12100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Stimulator of interferon genes protein 0.60 42.0 2.92e-01 78.7% 65.0%
1iz6A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.59 47.0 4.20e-01 91.5% 87.0%
3anzC00 2.70.240.10 Mainly Beta › Distorted Sandwich › Leukocidin-like › Leukocidin/porin MspA 0.58 46.0 2.98e-01 100.0% 89.1%
2wkcB00 2.40.50.400 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Lactococcus phage single-stranded DNA binding protein 0.58 40.0 3.37e-01 76.6% 96.6%
2v8pA01 3.30.230.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.57 46.0 3.39e-01 100.0% 69.0%
3abzA03 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.57 45.0 3.31e-01 100.0% 30.9%
3jb4C00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.57 45.0 3.02e-01 100.0% 40.7%
4h3wA01 2.60.290.20 Mainly Beta › Sandwich › Hypothetical Protein Tm1070; Chain: A › Protein of unknown function (DUF4621), C-terminal domain 0.56 44.0 3.51e-01 100.0% 68.0%
5cm2Z00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.56 38.0 2.55e-01 85.1% 17.9%
4gwmA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.55 43.0 3.17e-01 100.0% 48.2%
2e8yA04 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.55 42.0 3.57e-01 95.7% 47.8%
1s3rA04 2.60.40.1430 Mainly Beta › Sandwich › Immunoglobulin-like › Perfringolysin, domain 4 0.54 45.0 3.52e-01 100.0% 94.6%
4bwiB02 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.54 42.0 3.02e-01 100.0% 91.9%
1uasA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.53 37.0 3.24e-01 95.7% 43.2%
2rjbA00 3.10.180.80 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › Uncharacterised protein PF07063, DUF1338 0.53 39.0 2.41e-01 91.5% 32.5%
4gl6A01 3.10.450.570 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Domain of unknown function (DUF5037), N-terminal subdomain 0.52 44.0 3.74e-01 97.9% 69.5%
4e2xA01 6.20.50.110 Special › Other non-globular › N-terminal domain of TfIIb › Methyltransferase, zinc-binding domain 0.52 35.0 3.43e-01 70.2% 92.5%
2khaA01 2.60.40.2140 Mainly Beta › Sandwich › Immunoglobulin-like › Beta-1,3-glucan-recognition protein, N-terminal domain 0.52 42.0 3.45e-01 100.0% 49.5%
6gp1A00 3.30.1300.40 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 0.52 38.0 3.60e-01 89.4% 75.4%
5axmB00 3.30.70.3000 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › tRNA(His) guanylyltransferase (Thg1) 0.52 39.0 2.73e-01 100.0% 41.8%
4iupB01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.51 41.0 3.84e-01 91.5% 87.1%
1b35C00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.51 35.0 2.35e-01 83.0% 59.6%
3klqA01 2.60.40.3050 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 35.0 2.78e-01 76.6% 78.2%
1mk1A00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.50 40.0 2.85e-01 100.0% 57.8%
ECOD (59)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4395919 11.1.1.66 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › MdoG 0.76 64.0 4.79e-01 100.0% 50.4%
5021015 11.1.1.130 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Inhibitor_I42 0.76 64.0 5.50e-01 100.0% 63.3%
3678439 246.3.1.4 a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos2 0.74 50.0 3.33e-01 70.2% 17.5%
3957104 11.13.1.3 beta sandwiches › Immunoglobulin-like beta-sandwich › Leukocidin-like › Leukocidin-like › MspA 0.70 50.0 3.33e-01 76.6% 67.9%
3911618 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.68 46.0 3.10e-01 70.2% 61.1%
3464996 11.1.5.29 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › Sec23_BS 0.67 56.0 4.17e-01 100.0% 50.8%
4003646 11.1.5.29 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › Sec23_BS 0.66 56.0 4.31e-01 100.0% 52.2%
4234779 212.1.1.3 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › GHMP_kinases_N 0.66 53.0 3.70e-01 95.7% 68.8%
3183631 11.1.5.29 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › Sec23_BS 0.65 55.0 3.79e-01 100.0% 40.6%
4380590 212.1.1.3 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › GHMP_kinases_N 0.64 50.0 3.60e-01 95.7% 74.5%
3479689 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.63 51.0 4.57e-01 100.0% 66.7%
4950455 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.62 53.0 4.69e-01 97.9% 91.4%
3993716 327.7.1.0 a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like 0.62 49.0 4.44e-01 93.6% 92.9%
4931072 4.1.1.139 beta barrels › SH3 › SH3 › SH3 › IF5A-like_N 0.62 50.0 4.47e-01 93.6% 85.7%
3971528 212.1.1.0 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like 0.61 48.0 3.52e-01 95.7% 71.6%
3271234 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 46.0 4.66e-01 83.0% 91.1%
4321312 212.1.1.3 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › GHMP_kinases_N 0.61 48.0 3.30e-01 95.7% 69.2%
3580610 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 45.0 3.04e-01 80.9% 76.8%
4341190 212.1.1.3 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › GHMP_kinases_N 0.61 48.0 3.50e-01 100.0% 73.3%
3829071 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.60 47.0 3.69e-01 87.2% 99.0%
4026835 375.1.1.273 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Sec23_BS 0.60 50.0 3.22e-01 100.0% 23.6%
3381414 5.1.2.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.60 51.0 3.55e-01 97.9% 47.1%
5019198 11.1.5.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.60 48.0 3.79e-01 97.9% 60.0%
3940894 60.1.1.0 beta barrels › SPOC domain-like › SPOC domain-related › SPOC domain 0.60 42.0 3.03e-01 72.3% 52.0%
4995812 283.2.1.1 a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › GPW_gp25 0.59 50.0 3.99e-01 97.9% 73.0%
3958979 212.1.1.0 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like 0.59 48.0 3.44e-01 100.0% 72.7%
4081680 212.1.1.3 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › GHMP_kinases_N 0.59 45.0 3.35e-01 95.7% 68.8%
4663663 212.1.1.3 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › GHMP_kinases_N 0.59 47.0 3.43e-01 100.0% 67.9%
3612182 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.59 39.0 3.27e-01 70.2% 58.9%
5018717 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.58 46.0 4.41e-01 87.2% 94.5%
4342937 212.1.1.3 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › GHMP_kinases_N 0.58 46.0 3.32e-01 100.0% 65.9%
3938274 2003.1.3.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain 0.57 48.0 3.21e-01 97.9% 97.6%
3664856 4154.1.1.2 beta duplicates or obligate multimers › E2F-DP heterodimerization region › E2F-DP heterodimerization region › E2F-DP heterodimerization region › E2F_CC-MB 0.57 44.0 3.58e-01 97.9% 42.6%
4102838 212.1.1.3 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › GHMP_kinases_N 0.57 44.0 3.26e-01 100.0% 70.6%
5045706 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.57 46.0 4.23e-01 100.0% 82.9%
3731651 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 43.0 3.92e-01 93.6% 70.7%
4094315 212.1.1.3 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › GHMP_kinases_N 0.57 43.0 3.23e-01 97.9% 67.5%
4935884 2484.1.1.34 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 0.57 47.0 2.82e-01 100.0% 16.8%
3400896 11.1.5.84 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › ERMP1_C 0.57 45.0 3.03e-01 95.7% 95.0%
3993718 3256.1.1.0 a+b two layers › DUF2233 N-terminal domain › DUF2233 N-terminal domain › DUF2233 N-terminal domain 0.57 48.0 4.17e-01 97.9% 89.3%
4369780 212.1.1.3 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › GHMP_kinases_N 0.56 44.0 3.20e-01 100.0% 65.1%
4093680 212.1.1.3 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › GHMP_kinases_N 0.56 43.0 3.22e-01 100.0% 71.2%
4391071 212.1.1.3 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › GHMP_kinases_N 0.55 43.0 3.15e-01 100.0% 64.7%
3660053 2004.1.1.19 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras 0.55 38.0 2.59e-01 76.6% 23.6%
3811535 331.3.1.28 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › DUF220 0.55 45.0 3.46e-01 97.9% 49.6%
4385584 327.13.1.2 a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif I in type III secretion system › Ring-building motif I in type III secretion system › YscJ_FliF_C 0.54 44.0 3.18e-01 100.0% 83.5%
3582108 10.32.1.226 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › GBD_Tenm3 0.54 43.0 3.65e-01 100.0% 60.6%
3557121 4.8.1.1 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo 0.53 39.0 3.54e-01 80.9% 74.3%
3707942 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.53 45.0 3.47e-01 100.0% 40.9%
3350498 212.1.1.3 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › GHMP_kinases_N 0.53 42.0 2.97e-01 100.0% 64.2%
3177469 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.53 40.0 3.65e-01 89.4% 77.1%
None 0.53 40.0 2.79e-01 85.1% 37.1%
3604192 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 40.0 3.14e-01 100.0% 70.7%
4124759 212.1.1.3 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › GHMP_kinases_N 0.51 35.0 2.48e-01 76.6% 63.7%
4961968 286.1.1.4 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Pro_racemase 0.51 36.0 2.55e-01 78.7% 67.2%
1627398 2002.1.1.174 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › MR_MLE_C 0.51 38.0 3.62e-01 85.1% 69.1%
4204159 212.1.1.3 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › GHMP_kinases_N 0.51 38.0 2.87e-01 97.9% 41.8%
4487695 212.1.1.3 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › GHMP_kinases_N 0.50 40.0 2.91e-01 100.0% 68.2%
4114035 212.1.1.3 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › GHMP_kinases_N 0.50 37.0 2.83e-01 97.9% 41.8%