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OK040790.1__UDL16018.1__SEA_PUMPERNICKEL_268__00227
Bact-VirOK040790.1__UDL16018.1__SEA_PUMPERNICKEL_268__00227
Identity
- Accession:
- OK040790 ↗
- Kingdom:
- phage
Quality
86.1
mean pLDDT
Taxonomy
TaxID: 2885983
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-58
Domain cluster:
representative
CATH (45)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3bcwA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.73 | 46.0 | 3.74e-01 | 100.0% | 34.6% |
| 4iauA01 | 2.60.20.10 | Mainly Beta › Sandwich › Gamma-B Crystallin; domain 1 › Crystallins | 0.72 | 43.0 | 3.85e-01 | 100.0% | 43.6% |
| 1u1sA00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.68 | 53.0 | 5.07e-01 | 100.0% | 72.7% |
| 3m70A01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.67 | 46.0 | 3.80e-01 | 100.0% | 39.6% |
| 1kq1H00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.67 | 51.0 | 4.85e-01 | 96.5% | 71.2% |
| 3lgdA00 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.65 | 40.0 | 2.35e-01 | 100.0% | 7.3% |
| 1y96D00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.62 | 52.0 | 4.68e-01 | 98.2% | 67.5% |
| 2fb7A00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.61 | 53.0 | 4.77e-01 | 100.0% | 88.7% |
| 2ej9A02 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.61 | 45.0 | 4.78e-01 | 93.0% | 91.8% |
| 6rptC00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.61 | 46.0 | 3.70e-01 | 100.0% | 42.0% |
| 1d3bB00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.61 | 51.0 | 4.68e-01 | 100.0% | 87.7% |
| 3cw3A00 | 2.60.20.10 | Mainly Beta › Sandwich › Gamma-B Crystallin; domain 1 › Crystallins | 0.60 | 39.0 | 3.39e-01 | 100.0% | 40.9% |
| 1y96A00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.60 | 51.0 | 4.50e-01 | 100.0% | 65.1% |
| 6julA02 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.60 | 52.0 | 4.31e-01 | 100.0% | 56.2% |
| 3in6A02 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.59 | 49.0 | 3.91e-01 | 100.0% | 45.3% |
| 2m6pA00 | 2.20.28.270 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › RNA polymerase-binding protein A | 0.59 | 39.0 | 4.24e-01 | 94.7% | 84.8% |
| 3vzbB02 | 2.60.200.40 | Mainly Beta › Sandwich › Tumour Suppressor Smad4 › | 0.58 | 51.0 | 3.57e-01 | 100.0% | 96.9% |
| 5escA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.58 | 48.0 | 3.82e-01 | 100.0% | 44.5% |
| 2fg9A01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.58 | 47.0 | 3.42e-01 | 100.0% | 32.1% |
| 1unnC00 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.58 | 47.0 | 3.80e-01 | 100.0% | 46.8% |
| 4kncA02 | 2.60.120.1380 | Mainly Beta › Sandwich › Jelly Rolls › C-terminal carbohydrate-binding module | 0.57 | 48.0 | 3.74e-01 | 100.0% | 44.4% |
| 1ca1A02 | 2.60.60.20 | Mainly Beta › Sandwich › Lipoxygenase-1 › PLAT/LH2 domain | 0.57 | 49.0 | 3.79e-01 | 100.0% | 45.0% |
| 3b8fB00 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.57 | 48.0 | 3.52e-01 | 100.0% | 36.6% |
| 2iv2X01 | 2.20.25.90 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ADC-like domains | 0.57 | 43.0 | 4.45e-01 | 89.5% | 87.3% |
| 3fgeA01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.56 | 50.0 | 3.52e-01 | 100.0% | 85.5% |
| 3e4vA01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.55 | 47.0 | 3.36e-01 | 100.0% | 31.6% |
| 8ct0B01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.55 | 47.0 | 3.38e-01 | 100.0% | 33.1% |
| 4o1sA00 | 2.170.16.10 | Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain | 0.55 | 50.0 | 3.51e-01 | 100.0% | 38.8% |
| 3mfiA04 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.54 | 48.0 | 3.80e-01 | 100.0% | 52.1% |
| 4iauA02 | 2.60.20.10 | Mainly Beta › Sandwich › Gamma-B Crystallin; domain 1 › Crystallins | 0.54 | 37.0 | 3.35e-01 | 96.5% | 50.6% |
| 2budA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.54 | 44.0 | 3.87e-01 | 96.5% | 59.8% |
| 2gysA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 42.0 | 3.71e-01 | 100.0% | 58.1% |
| 3qnfC01 | 2.60.40.1730 | Mainly Beta › Sandwich › Immunoglobulin-like › tricorn interacting facor f3 domain | 0.53 | 38.0 | 2.72e-01 | 80.7% | 71.2% |
| 2oviA00 | 3.40.1570.10 | Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains | 0.52 | 44.0 | 3.32e-01 | 100.0% | 50.0% |
| 4ewfA00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.52 | 39.0 | 2.61e-01 | 86.0% | 94.0% |
| 7ylrA01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.52 | 36.0 | 3.06e-01 | 73.7% | 92.4% |
| 1o54A01 | 3.10.330.20 | Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › | 0.52 | 45.0 | 4.20e-01 | 96.5% | 79.2% |
| 2d5mA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.51 | 44.0 | 3.14e-01 | 100.0% | 77.6% |
| 1i9gA01 | 3.10.330.20 | Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › | 0.51 | 44.0 | 4.31e-01 | 96.5% | 89.1% |
| 2htdB00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.51 | 43.0 | 3.45e-01 | 100.0% | 46.0% |
| 6dddH00 | 2.40.240.10 | Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Ribosomal Protein L25; Chain P | 0.51 | 42.0 | 3.73e-01 | 100.0% | 66.7% |
| 4wsfA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.51 | 41.0 | 3.49e-01 | 100.0% | 72.1% |
| 5o9iA00 | 2.170.16.10 | Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain | 0.50 | 45.0 | 3.20e-01 | 100.0% | 40.9% |
| 4he6A00 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.50 | 42.0 | 3.73e-01 | 98.2% | 62.9% |
| 2pwyA01 | 3.10.330.20 | Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › | 0.50 | 43.0 | 4.34e-01 | 96.5% | 100.0% |
ECOD (60)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3953959 | 4.1.1.424 ↗ | beta barrels › SH3 › SH3 › SH3 › PF29823 | 0.70 | 56.0 | 5.89e-01 | 87.7% | 100.0% |
| 4123180 | 4.1.1.96 ↗ | beta barrels › SH3 › SH3 › SH3 › Hfq | 0.70 | 54.0 | 4.94e-01 | 100.0% | 64.0% |
| 4658938 | 4.1.1.96 ↗ | beta barrels › SH3 › SH3 › SH3 › Hfq | 0.70 | 54.0 | 4.63e-01 | 100.0% | 53.3% |
| 3471151 | 210.1.3.1 ↗ | a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_2 | 0.68 | 43.0 | 2.95e-01 | 100.0% | 18.5% |
| 3883725 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.67 | 57.0 | 4.62e-01 | 98.2% | 97.4% |
| 5005252 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.66 | 49.0 | 5.38e-01 | 94.7% | 100.0% |
| 3740204 | 4.1.1.71 ↗ | beta barrels › SH3 › SH3 › SH3 › Gemin7 | 0.64 | 55.0 | 4.89e-01 | 100.0% | 67.1% |
| 3936053 | 4.1.1.71 ↗ | beta barrels › SH3 › SH3 › SH3 › Gemin7 | 0.63 | 54.0 | 5.11e-01 | 96.5% | 78.6% |
| 3772638 | 4.1.1.71 ↗ | beta barrels › SH3 › SH3 › SH3 › Gemin7 | 0.63 | 55.0 | 4.90e-01 | 98.2% | 69.1% |
| 2701178 | 4.1.1.71 ↗ | beta barrels › SH3 › SH3 › SH3 › Gemin7 | 0.63 | 53.0 | 4.72e-01 | 98.2% | 64.4% |
| 4937158 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.63 | 46.0 | 4.56e-01 | 100.0% | 76.7% |
| 5026766 | 4.1.1.19 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM | 0.63 | 54.0 | 5.19e-01 | 96.5% | 84.6% |
| 4030011 | 4.1.1.89 ↗ | beta barrels › SH3 › SH3 › SH3 › SM-ATX | 0.62 | 53.0 | 4.61e-01 | 96.5% | 74.4% |
| 3624163 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.62 | 54.0 | 4.72e-01 | 100.0% | 63.3% |
| 3566453 | 6043.1.1.4 ↗ | a+b two layers › yfeY-like › yfeY-like › yfeY-like › PHAF1 | 0.62 | 42.0 | 3.64e-01 | 71.9% | 100.0% |
| 3786396 | 4.1.1.17 ↗ | beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 | 0.62 | 54.0 | 4.21e-01 | 100.0% | 47.7% |
| 3793196 | 4.1.1.71 ↗ | beta barrels › SH3 › SH3 › SH3 › Gemin7 | 0.62 | 53.0 | 4.64e-01 | 100.0% | 64.4% |
| 4952430 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.61 | 50.0 | 4.20e-01 | 98.2% | 57.3% |
| 3227009 | 4.1.1.71 ↗ | beta barrels › SH3 › SH3 › SH3 › Gemin7 | 0.61 | 50.0 | 4.62e-01 | 93.0% | 70.7% |
| 4013487 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.61 | 52.0 | 4.18e-01 | 94.7% | 63.6% |
| 3625817 | 4.1.1.219 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM12_LSM | 0.61 | 53.0 | 4.78e-01 | 100.0% | 72.5% |
| 3173156 | 4.1.1.344 ↗ | beta barrels › SH3 › SH3 › SH3 › PF31193 | 0.59 | 51.0 | 4.62e-01 | 100.0% | 71.2% |
| 4332271 | 10.10.1.1 ↗ | beta sandwiches › jelly-roll › Lipase/lipooxygenase domain (PLAT/LH2 domain) › Lipase/lipooxygenase domain (PLAT/LH2 domain) › PLAT | 0.59 | 51.0 | 3.89e-01 | 100.0% | 43.9% |
| 3927305 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.58 | 51.0 | 4.14e-01 | 100.0% | 81.8% |
| 4183853 | 4.1.1.435 ↗ | beta barrels › SH3 › SH3 › SH3 › PF29216 | 0.58 | 47.0 | 4.44e-01 | 98.2% | 75.7% |
| 3519122 | 4.31.1.1 ↗ | beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL | 0.58 | 47.0 | 4.16e-01 | 100.0% | 61.1% |
| 3612351 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.57 | 47.0 | 4.42e-01 | 96.5% | 88.0% |
| 4033484 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.57 | 50.0 | 4.85e-01 | 100.0% | 87.5% |
| 3703449 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.57 | 48.0 | 4.49e-01 | 100.0% | 92.0% |
| 4235551 | 221.15.1.0 ↗ | a+b two layers › beta-Grasp › beta-grasp fold domain in leucine-tRNA ligase › beta-grasp fold domain in leucine-tRNA ligase | 0.56 | 32.0 | 3.80e-01 | 78.9% | 88.6% |
| 4034317 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.56 | 49.0 | 4.79e-01 | 96.5% | 87.3% |
| 5052022 | 1.1.5.10 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct | 0.56 | 49.0 | 3.57e-01 | 100.0% | 63.9% |
| 3328647 | 4.1.1.219 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM12_LSM | 0.55 | 48.0 | 4.25e-01 | 100.0% | 67.1% |
| 5062678 | 73.1.1.1 ↗ | beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › FHA | 0.55 | 48.0 | 3.83e-01 | 100.0% | 99.2% |
| 4955287 | 1.1.5.10 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct | 0.55 | 47.0 | 3.31e-01 | 100.0% | 30.6% |
| 5066224 | 4.11.1.1 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 | 0.54 | 42.0 | 3.80e-01 | 100.0% | 60.0% |
| 3597547 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.54 | 46.0 | 3.54e-01 | 100.0% | 51.1% |
| 3258223 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 41.0 | 3.38e-01 | 100.0% | 44.5% |
| 4993853 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.53 | 48.0 | 3.43e-01 | 100.0% | 40.0% |
| 4983458 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.53 | 49.0 | 3.43e-01 | 100.0% | 40.0% |
| 4993813 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.53 | 40.0 | 2.99e-01 | 86.0% | 93.8% |
| 5016702 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.53 | 44.0 | 3.83e-01 | 100.0% | 59.1% |
| 3822637 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.53 | 40.0 | 3.44e-01 | 100.0% | 50.5% |
| 3308351 | 73.1.1.0 ↗ | beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain | 0.52 | 46.0 | 3.73e-01 | 100.0% | 99.1% |
| 3604113 | 69.1.1.4 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing | 0.52 | 47.0 | 3.46e-01 | 100.0% | 42.8% |
| 3895056 | 11.1.1.96 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C1-set | 0.52 | 46.0 | 3.62e-01 | 100.0% | 47.5% |
| 1030895 | 284.1.1.0 ↗ | a+b two layers › FKBP-like › FKBP-like › FKBP-like | 0.52 | 45.0 | 4.29e-01 | 96.5% | 83.8% |
| 4984220 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.52 | 37.0 | 2.86e-01 | 80.7% | 97.4% |
| 3781383 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.51 | 41.0 | 3.71e-01 | 100.0% | 62.2% |
| 5037173 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.51 | 41.0 | 3.64e-01 | 96.5% | 63.2% |
| 3273875 | 73.1.1.0 ↗ | beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain | 0.51 | 42.0 | 3.54e-01 | 96.5% | 100.0% |
| 4998392 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.51 | 45.0 | 3.22e-01 | 100.0% | 53.3% |
| 4939562 | 284.1.1.9 ↗ | a+b two layers › FKBP-like › FKBP-like › FKBP-like › TrmI-like_N | 0.51 | 44.0 | 4.23e-01 | 96.5% | 87.7% |
| 3282775 | 284.1.1.9 ↗ | a+b two layers › FKBP-like › FKBP-like › FKBP-like › TrmI-like_N | 0.51 | 44.0 | 4.23e-01 | 96.5% | 87.7% |
| 3277296 | 11.1.1.843 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7034 | 0.51 | 44.0 | 3.43e-01 | 100.0% | 45.4% |
| 3923860 | 11.1.1.1086 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF28829 | 0.51 | 41.0 | 3.25e-01 | 100.0% | 41.5% |
| 4971412 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.51 | 45.0 | 3.15e-01 | 100.0% | 43.9% |
| 3772640 | 10.21.1.1 ↗ | beta sandwiches › jelly-roll › Jelly-roll domain in ADAMTS13 › Jelly-roll domain in ADAMTS13 › ADAMTS_spacer1 | 0.50 | 45.0 | 3.46e-01 | 100.0% | 44.8% |
| 4999902 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.50 | 43.0 | 3.28e-01 | 100.0% | 44.1% |
| 3391409 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.50 | 44.0 | 3.23e-01 | 100.0% | 38.7% |