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OK040790.1__UDL16049.1__SEA_PUMPERNICKEL_299__00258

Bact-Vir

OK040790.1__UDL16049.1__SEA_PUMPERNICKEL_299__00258

Identity

Accession:
OK040790 ↗
Kingdom:
phage

Quality

86.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pumpernickelvirus› Microbacterium_phage_Pumpernickel

TaxID: 2885983

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 40-90
PDB
Domain cluster: representative
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1z0pA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.75 60.0 5.32e-01 90.2% 61.6%
1i5nB00 1.20.120.160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain 0.75 66.0 4.95e-01 100.0% 92.7%
4jdxF00 6.10.140.1840 Special › Helix non-globular › Helix Hairpins › 0.72 64.0 5.29e-01 100.0% 73.3%
6biiA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.67 47.0 3.36e-01 74.5% 89.9%
2kr6A01 1.10.472.100 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Presenilin 0.59 43.0 3.47e-01 82.4% 38.7%
7qv0F01 1.10.1200.10 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like 0.58 41.0 3.53e-01 72.5% 65.4%
3ec7A01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.58 49.0 3.28e-01 100.0% 32.9%
ECOD (10)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4133095 601.2.1.1 ↗ alpha bundles › Four-helical up-and-down bundle › Cytochromes › Cytochromes › 7tm_1 0.77 66.0 5.01e-01 100.0% 88.8%
3339569 101.1.1.31 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.73 61.0 5.13e-01 100.0% 53.9%
3884605 219.1.1.80 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF4796_C 0.65 46.0 3.42e-01 74.5% 41.1%
3683987 109.4.1.1300 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_8, TPR_16, TPR_19 0.65 47.0 2.90e-01 78.4% 11.9%
3437328 632.10.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Coronavirus NSP7-like › Coronavirus NSP7-like 0.65 45.0 4.45e-01 74.5% 69.1%
3343874 109.4.1.1300 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_8, TPR_16, TPR_19 0.64 46.0 2.67e-01 78.4% 7.2%
3285340 101.1.2.26 ↗ alpha arrays › HTH › HTH › winged helix domain › HxlR 0.64 51.0 3.57e-01 86.3% 39.4%
4364450 101.1.2.46 ↗ alpha arrays › HTH › HTH › winged helix domain › HrcA_DNA-bdg 0.62 45.0 3.40e-01 80.4% 29.3%
223873 70.3.1.11 ↗ beta barrels › beta-clip › SET domain-like › SET domain-like › SET, zf-MYND 0.53 43.0 2.75e-01 94.1% 85.2%
4428892 60.1.2.1 ↗ beta barrels › SPOC domain-like › SPOC domain-related › Ku70/80 subunit middle domain › Ku 0.52 40.0 2.58e-01 84.3% 20.4%