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OK040793.1__UDL16414.1__SEA_ZOOMAN_173__00131

Bact-Vir

OK040793.1__UDL16414.1__SEA_ZOOMAN_173__00131

Identity

Accession:
OK040793 ↗
Kingdom:
phage

Quality

82.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-76
PDB
Domain cluster: representative
CATH (34)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3cygA01 3.30.565.40 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Fervidobacterium nodosum Rt17-B1 like 0.77 60.0 5.11e-01 88.9% 51.3%
4htgA03 3.30.160.40 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain 0.69 42.0 4.12e-01 72.2% 55.7%
2qlzA02 6.10.250.2960 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.68 50.0 4.73e-01 77.8% 65.1%
2vf9A00 3.30.380.10 Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein 0.66 48.0 3.98e-01 77.8% 54.2%
4kwyA00 3.30.160.150 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain 0.66 57.0 4.57e-01 94.4% 88.3%
6vq6H01 1.10.287.3240 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.64 49.0 3.50e-01 80.6% 87.3%
2fggA01 3.30.160.240 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Rv1738 0.63 53.0 5.24e-01 88.9% 96.0%
4bbyA05 3.30.300.330 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › 0.63 45.0 3.98e-01 76.4% 83.3%
1lshA03 2.20.50.20 Mainly Beta › Single Sheet › Outer Surface Protein A; domain 2 › Lipovitellin. Chain A, domain 3 0.61 41.0 3.74e-01 88.9% 51.0%
7szeB02 3.90.380.10 Alpha Beta › Alpha-Beta Complex › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 0.61 47.0 3.49e-01 83.3% 82.1%
1cx8A01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.61 44.0 2.90e-01 80.6% 17.9%
1otgA00 3.30.429.10 Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor 0.59 44.0 3.71e-01 80.6% 77.6%
2kvtA00 3.30.730.30 Alpha Beta › 2-Layer Sandwich › GCC-box Binding Domain › YaiA protein 0.58 35.0 3.60e-01 88.9% 60.6%
3gxwC00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.58 43.0 3.93e-01 81.9% 61.0%
8dqaA01 3.30.429.10 Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor 0.57 40.0 3.59e-01 72.2% 89.8%
2hj1A00 3.10.20.280 Alpha Beta › Roll › Ubiquitin-like (UB roll) › RnfH-like 0.57 34.0 3.42e-01 80.6% 55.8%
5du9B02 3.30.559.30 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Nonribosomal peptide synthetase, condensation domain 0.56 44.0 3.14e-01 84.7% 91.7%
1qsmD00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.56 38.0 3.01e-01 70.8% 61.2%
2w4yA00 2.40.160.220 Mainly Beta › Beta Barrel › Porin › 0.56 41.0 3.48e-01 77.8% 48.4%
2wxfA02 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.56 33.0 2.77e-01 73.6% 34.5%
5da9A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.56 49.0 3.16e-01 100.0% 67.4%
1khmA00 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.54 39.0 3.67e-01 76.4% 83.1%
3c19A02 3.10.20.300 Alpha Beta › Roll › Ubiquitin-like (UB roll) › mk0293 like domain 0.54 36.0 3.52e-01 81.9% 62.8%
5axmB00 3.30.70.3000 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › tRNA(His) guanylyltransferase (Thg1) 0.54 43.0 2.98e-01 86.1% 39.3%
2rs7A01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.53 37.0 3.69e-01 76.4% 70.3%
2rrfA00 2.30.29.160 Mainly Beta › Roll › PH-domain like › Zinc finger FYVE domain-containing protein 21, C-terminal 0.53 40.0 3.22e-01 81.9% 77.3%
1fneA01 3.10.320.10 Alpha Beta › Roll › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 0.53 39.0 3.80e-01 79.2% 86.1%
4mh4A02 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.52 37.0 3.45e-01 75.0% 59.6%
1tzlA02 3.30.1920.50 Alpha Beta › 2-Layer Sandwich › Phage tail proteins - 2 layer sandwich fold › 0.52 31.0 3.35e-01 73.6% 67.7%
2cduA03 3.30.390.30 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain 0.52 37.0 3.32e-01 79.2% 66.4%
2joqA01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.52 37.0 3.68e-01 76.4% 93.3%
3g2eB00 3.40.920.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 0.52 40.0 3.02e-01 84.7% 94.1%
4rgyA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.51 35.0 2.46e-01 70.8% 34.2%
6pfzD02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 37.0 2.62e-01 80.6% 29.2%
ECOD (58)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3267419 601.51.1.7 alpha bundles › Four-helical up-and-down bundle › alpha-helical domain in phase 1 flagellin › alpha-helical domain in phase 1 flagellin › DUF4460 0.79 58.0 4.38e-01 77.8% 40.6%
4183868 878.1.1.1 a+b two layers › Hypothetical protein MTH677 › Hypothetical protein MTH677 › Hypothetical protein MTH677 › DUF3194 0.74 51.0 4.92e-01 80.6% 64.6%
3838701 5085.1.1.1 a+b duplicates or obligate multimers › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › OEP 0.73 58.0 3.56e-01 84.7% 67.3%
3938203 5001.1.1.1 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.73 52.0 3.40e-01 75.0% 48.7%
4520610 5085.1.1.1 a+b duplicates or obligate multimers › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › OEP 0.73 55.0 3.39e-01 80.6% 47.5%
3971458 5085.1.1.0 a+b duplicates or obligate multimers › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) 0.73 59.0 3.62e-01 88.9% 80.6%
3798829 5001.1.1.1 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.71 54.0 3.78e-01 80.6% 72.9%
3975665 5085.1.1.1 a+b duplicates or obligate multimers › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › OEP 0.71 57.0 3.47e-01 86.1% 43.8%
3214822 5001.1.1.0 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.70 56.0 3.68e-01 87.5% 34.1%
4461398 5085.1.1.1 a+b duplicates or obligate multimers › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › OEP 0.69 56.0 3.43e-01 90.3% 81.1%
3708857 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.69 52.0 4.60e-01 80.6% 59.0%
3386397 5085.1.1.1 a+b duplicates or obligate multimers › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › OEP 0.69 54.0 3.40e-01 86.1% 98.3%
3912477 5001.1.1.5 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_3 0.69 58.0 3.80e-01 94.4% 84.1%
3244753 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.68 51.0 3.78e-01 79.2% 34.4%
4930552 3501.1.1.0 a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 0.68 51.0 4.95e-01 79.2% 96.2%
5037750 3926.1.1.1 alpha bundles › V-type proton ATPase subunit D › V-type proton ATPase subunit D › V-type proton ATPase subunit D › ATP-synt_D 0.67 56.0 4.01e-01 88.9% 43.1%
4985406 878.1.1.1 a+b two layers › Hypothetical protein MTH677 › Hypothetical protein MTH677 › Hypothetical protein MTH677 › DUF3194 0.67 46.0 4.47e-01 79.2% 64.6%
5073431 1075.1.1.0 alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain 0.66 58.0 3.49e-01 100.0% 35.4%
3971344 5085.1.1.1 a+b duplicates or obligate multimers › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › OEP 0.66 50.0 3.05e-01 80.6% 44.0%
3632364 603.1.1.120 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › DUF846 0.66 50.0 3.87e-01 81.9% 97.0%
3962822 331.3.1.2 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Ring_hydroxyl_A 0.65 53.0 4.34e-01 88.9% 49.6%
1841134 5085.1.1.1 a+b duplicates or obligate multimers › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › OEP 0.65 52.0 3.18e-01 87.5% 44.3%
4020396 3501.1.1.0 a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 0.65 54.0 5.01e-01 90.3% 98.9%
5055279 1075.1.2.0 alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain 0.65 55.0 3.95e-01 93.1% 80.5%
4972532 878.1.1.1 a+b two layers › Hypothetical protein MTH677 › Hypothetical protein MTH677 › Hypothetical protein MTH677 › DUF3194 0.64 47.0 4.40e-01 77.8% 98.9%
4066295 5085.1.1.1 a+b duplicates or obligate multimers › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › OEP 0.64 53.0 3.28e-01 93.1% 84.0%
3232066 5001.1.1.0 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.64 46.0 2.90e-01 75.0% 17.1%
4524129 330.4.1.1 a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.64 47.0 4.37e-01 80.6% 61.1%
5056319 177.1.1.0 alpha bundles › Phospholipase C/P1 nuclease › Phospholipase C/P1 nuclease › Phospholipase C/P1 nuclease 0.64 48.0 3.66e-01 83.3% 63.2%
4000297 5001.1.1.0 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.64 50.0 3.17e-01 81.9% 87.6%
3955267 331.3.1.5 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc 0.63 52.0 4.19e-01 87.5% 47.0%
3414623 101.1.2.566 alpha arrays › HTH › HTH › winged helix domain › CDT1, CDT1_C 0.63 51.0 3.31e-01 86.1% 42.4%
5052007 1075.1.1.0 alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain 0.62 48.0 3.22e-01 83.3% 73.8%
3959610 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.62 51.0 4.16e-01 88.9% 48.1%
3621671 5001.1.1.1 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.62 51.0 3.24e-01 90.3% 44.9%
3925690 284.1.3.0 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.60 45.0 4.46e-01 80.6% 74.7%
5049862 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.60 51.0 3.78e-01 91.7% 53.1%
4001707 284.1.3.0 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.60 48.0 4.57e-01 88.9% 72.9%
4984373 3926.1.1.1 alpha bundles › V-type proton ATPase subunit D › V-type proton ATPase subunit D › V-type proton ATPase subunit D › ATP-synt_D 0.60 48.0 3.58e-01 93.1% 36.6%
4021913 109.3.1.1 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank 0.59 49.0 2.95e-01 94.4% 11.9%
3265334 216.1.1.0 a+b two layers › UBC-like › UBC-like › UBC-like 0.59 42.0 3.74e-01 77.8% 79.1%
3774738 7529.1.1.11 a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like › DUF2362 0.59 48.0 4.58e-01 93.1% 75.3%
3578140 3937.1.1.2 alpha bundles › Connexin 26 › Connexin 26 › Connexin 26 › Innexin 0.59 49.0 3.08e-01 93.1% 52.7%
3238943 5001.1.1.1 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.58 50.0 3.38e-01 100.0% 41.9%
3717169 298.1.1.24 a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C3 0.58 47.0 3.34e-01 86.1% 83.0%
3905302 284.1.3.8 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › Fy-3 0.57 47.0 4.48e-01 91.7% 75.3%
3697816 2008.1.1.99 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_12 0.57 47.0 3.51e-01 91.7% 47.8%
4933528 3926.1.1.1 alpha bundles › V-type proton ATPase subunit D › V-type proton ATPase subunit D › V-type proton ATPase subunit D › ATP-synt_D 0.56 44.0 3.34e-01 91.7% 36.7%
4330094 330.4.1.1 a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.56 40.0 3.80e-01 90.3% 62.2%
2579238 324.1.1.1 a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC 0.55 40.0 3.15e-01 93.1% 35.5%
4018954 327.10.1.0 a+b two layers › Alpha-lytic protease prodomain-like › Ribosome-binding factor A (RbfA)-related › Ribosome-binding factor A (RbfA)-related 0.55 40.0 3.44e-01 77.8% 68.7%
3743779 101.1.2.31 alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.55 43.0 3.32e-01 83.3% 83.9%
3510702 2004.1.1.107 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DnaB_C 0.55 37.0 2.61e-01 73.6% 20.4%
3362546 327.11.2.1 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 0.55 41.0 3.78e-01 81.9% 84.2%
3618372 2484.1.1.99 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Peptidase_A17 0.52 40.0 3.50e-01 88.9% 55.0%
4117447 376.1.2.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.51 38.0 2.64e-01 80.6% 60.9%
3593809 304.31.1.0 a+b two layers › Alpha-beta plaits › HMG-CoA reductase › NAD-binding domain of HMG-CoA reductase 0.51 40.0 3.42e-01 83.3% 88.2%
5050683 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.50 40.0 3.46e-01 91.7% 55.2%