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OK040793.1__UDL16435.1__SEA_ZOOMAN_194__00152

Bact-Vir

OK040793.1__UDL16435.1__SEA_ZOOMAN_194__00152

Identity

Accession:
OK040793 ↗
Kingdom:
phage

Quality

74.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Microbacterium_phage_Zooman

TaxID: 2885984

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-68
PDB
Domain cluster: representative
CATH (38)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2daxA01 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.62 46.0 3.56e-01 80.3% 48.9%
2kumA01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.62 42.0 4.33e-01 86.9% 75.4%
2ar5A00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.62 51.0 4.17e-01 93.4% 49.6%
2lezA00 3.30.2450.10 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › Secreted effector protein pipB2 0.61 50.0 4.10e-01 100.0% 48.3%
4iupB01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.59 40.0 4.02e-01 78.7% 69.4%
5hx0A00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.59 51.0 3.17e-01 100.0% 37.5%
1whqA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.58 44.0 4.23e-01 82.0% 74.6%
3kf8A00 2.40.50.1040 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.58 46.0 3.23e-01 88.5% 44.9%
2i7xA01 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.58 38.0 2.47e-01 77.0% 14.7%
1ir3A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.57 40.0 3.52e-01 73.8% 85.3%
2wzoA01 3.30.160.360 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.57 48.0 3.85e-01 100.0% 51.9%
7arcC01 3.30.460.80 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › NADH:ubiquinone oxidoreductase Nqo5 subunit 0.57 44.0 3.49e-01 86.9% 43.0%
2khxA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.57 42.0 3.97e-01 83.6% 78.5%
1x47A01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.57 47.0 4.22e-01 93.4% 79.3%
1qypA00 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.56 41.0 4.22e-01 77.0% 84.2%
5hy7B01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 48.0 2.96e-01 100.0% 36.9%
6s8zA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.56 46.0 4.67e-01 98.4% 90.3%
3dcxA00 2.30.29.50 Mainly Beta › Roll › PH-domain like › Bacterial Pleckstrin homology domain 0.56 43.0 3.52e-01 91.8% 44.4%
1uhzA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.56 42.0 3.79e-01 83.6% 58.4%
7kx7A03 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.56 44.0 3.08e-01 90.2% 47.9%
2k2jA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 41.0 3.33e-01 86.9% 41.0%
2hdlA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.55 42.0 3.92e-01 88.5% 66.2%
4yisB02 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.55 44.0 3.57e-01 95.1% 55.1%
3htvA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.55 44.0 3.64e-01 88.5% 92.8%
3k4zA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.55 43.0 3.20e-01 86.9% 86.4%
2qkdA01 2.20.25.420 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain 0.55 39.0 4.16e-01 77.0% 100.0%
5ahoA01 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.55 38.0 2.72e-01 73.8% 33.5%
4ft4A02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.54 37.0 2.35e-01 73.8% 12.4%
2nugB02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.54 40.0 3.88e-01 82.0% 77.5%
6guuA01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.54 37.0 3.84e-01 78.7% 81.5%
1dwnA00 3.30.380.10 Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein 0.53 44.0 3.61e-01 100.0% 83.5%
2k3dA00 3.10.450.130 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › folded 79 residue fragment of lin0334 like domains 0.52 43.0 3.94e-01 100.0% 89.7%
3lxrF00 1.10.4120.20 Mainly Alpha › Orthogonal Bundle › SopE-like GEF fold › 0.52 39.0 2.90e-01 85.2% 81.2%
2cqaA01 2.40.50.360 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RuvBL1 DNA/RNA binding domain 0.51 42.0 3.97e-01 91.8% 89.2%
2yz0A00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.51 41.0 3.27e-01 93.4% 52.9%
2lt1A00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.51 41.0 3.92e-01 93.4% 81.3%
2fjlA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 41.0 3.16e-01 91.8% 80.0%
2dixA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.50 38.0 3.57e-01 85.2% 69.2%
ECOD (46)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5029226 375.1.1.21 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-ZPR1 0.70 53.0 5.59e-01 80.3% 98.2%
5043504 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.69 50.0 5.40e-01 77.0% 96.0%
3698931 216.1.1.4 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › RWD 0.68 52.0 4.02e-01 80.3% 39.2%
5050697 375.1.1.21 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-ZPR1 0.68 50.0 5.37e-01 78.7% 96.0%
3930705 4292.2.1.0 ↗ a+b two layers › FlaG-like › MAGUK binding stalk (MBS) domain › MAGUK binding stalk (MBS) domain 0.67 61.0 5.14e-01 100.0% 65.0%
3250605 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.65 51.0 4.10e-01 88.5% 45.6%
3432379 387.1.1.10 ↗ few secondary structure elements › omega toxin-like › omega toxin-related › omega toxin-related › zf-GRF 0.63 54.0 5.30e-01 95.1% 89.2%
3658860 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.62 43.0 2.95e-01 75.4% 20.0%
3335092 4.8.1.1 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo 0.60 41.0 3.98e-01 72.1% 65.7%
3652990 4.8.1.1 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo 0.60 41.0 3.64e-01 72.1% 48.9%
3783181 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.60 43.0 3.68e-01 83.6% 44.5%
3663817 4.8.1.1 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo 0.59 41.0 4.07e-01 85.2% 69.2%
4399266 2.4.1.12 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_3+CysA_C_terminal 0.59 38.0 3.15e-01 78.7% 35.7%
3429075 4.8.1.1 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo 0.58 41.0 3.84e-01 73.8% 61.3%
3797033 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.58 41.0 3.11e-01 75.4% 30.3%
3582655 4.8.1.1 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo 0.58 38.0 3.38e-01 85.2% 45.6%
3469035 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.58 38.0 3.89e-01 73.8% 70.0%
3673925 375.1.1.191 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_ribbon_GRF 0.57 39.0 4.22e-01 83.6% 97.8%
3257852 4.8.1.1 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo 0.57 40.0 4.15e-01 85.2% 81.8%
4024736 4.8.1.1 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo 0.57 37.0 3.71e-01 86.9% 63.1%
3673747 4.8.1.1 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo 0.57 39.0 4.13e-01 85.2% 81.8%
3623133 316.1.1.10 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Nrap 0.57 39.0 2.60e-01 78.7% 17.3%
4933787 2.21.1.0 ↗ beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) 0.57 42.0 3.14e-01 82.0% 81.8%
3181024 719.1.1.2 ↗ beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain › XLF 0.57 41.0 3.30e-01 78.7% 93.8%
4002532 5.1.2.30 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › RAB3GAP2_N 0.56 49.0 3.64e-01 98.4% 67.7%
3258657 4.8.1.1 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo 0.56 39.0 3.82e-01 75.4% 68.6%
3520870 247.1.1.0 ↗ a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase 0.56 41.0 2.70e-01 80.3% 24.3%
3504015 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.56 45.0 4.07e-01 90.2% 92.9%
5044597 375.1.1.21 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-ZPR1 0.56 39.0 4.06e-01 75.4% 94.0%
3724870 4.8.1.1 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo 0.55 38.0 3.57e-01 78.7% 56.2%
4990693 2.21.1.5 ↗ beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) › PF27234 0.54 43.0 3.17e-01 86.9% 80.0%
3268229 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 47.0 3.95e-01 98.4% 92.4%
4965528 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.53 43.0 3.09e-01 100.0% 36.4%
3744680 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.52 41.0 3.85e-01 85.2% 84.0%
4203258 7575.1.1.11 ↗ a/b three-layered sandwiches › Caspase-like › Caspase-like › Caspase-like › PF31181 0.52 40.0 2.71e-01 91.8% 64.7%
4941253 220.1.1.76 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.52 40.0 3.58e-01 91.8% 59.0%
4015016 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.52 40.0 3.77e-01 85.2% 78.7%
3259407 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.52 41.0 3.71e-01 88.5% 70.6%
3187166 4.8.1.1 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo 0.51 39.0 3.58e-01 85.2% 69.4%
4029222 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.51 38.0 3.04e-01 83.6% 65.2%
426155 2.24.1.1 ↗ beta barrels › OB-fold › probable receptor YhhM › probable receptor YhhM › DUF2500 0.51 40.0 3.89e-01 90.2% 93.0%
3221671 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.50 39.0 3.36e-01 85.2% 73.0%
3263635 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.50 36.0 3.61e-01 82.0% 73.8%
3553413 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.50 42.0 3.87e-01 100.0% 77.6%
3290300 220.1.1.76 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.50 39.0 3.63e-01 91.8% 68.2%
3768116 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.50 43.0 3.01e-01 100.0% 30.7%