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OK040793.1__UDL16543.1__SEA_ZOOMAN_302__00260
Bact-VirOK040793.1__UDL16543.1__SEA_ZOOMAN_302__00260
Identity
- Accession:
- OK040793 ↗
- Kingdom:
- phage
Quality
81.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-55
Domain cluster:
representative
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6g80B01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.54 | 42.0 | 2.84e-01 | 86.8% | 82.8% |
| 3bwxA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.52 | 40.0 | 2.52e-01 | 83.0% | 19.3% |
D2
high
residues 58-108
Domain cluster:
representative
CATH (23)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2gtsA00 | 1.10.287.850 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain | 0.83 | 64.0 | 5.56e-01 | 84.3% | 55.8% |
| 2y4tA02 | 1.10.287.110 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain | 0.77 | 60.0 | 6.03e-01 | 86.3% | 90.4% |
| 4errB00 | 1.20.58.1190 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.76 | 57.0 | 4.91e-01 | 82.4% | 56.6% |
| 2gsvA00 | 6.10.140.40 | Special › Helix non-globular › Helix Hairpins › | 0.74 | 56.0 | 5.24e-01 | 86.3% | 65.7% |
| 3axjB02 | 1.20.58.200 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 | 0.71 | 53.0 | 4.53e-01 | 82.4% | 50.6% |
| 1iurA01 | 1.10.287.110 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain | 0.71 | 53.0 | 5.06e-01 | 84.3% | 76.2% |
| 4g1tA01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.71 | 63.0 | 4.69e-01 | 98.0% | 47.2% |
| 2iexA02 | 1.10.12.10 | Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 | 0.70 | 54.0 | 5.43e-01 | 84.3% | 84.3% |
| 1j8yF01 | 1.20.120.140 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain | 0.70 | 56.0 | 4.75e-01 | 90.2% | 55.8% |
| 2cwyA00 | 1.10.3450.10 | Mainly Alpha › Orthogonal Bundle › Hyaluronidase domain-like › TTHA0068-like | 0.69 | 59.0 | 4.86e-01 | 96.1% | 53.8% |
| 3v9pB00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.69 | 54.0 | 3.64e-01 | 88.2% | 40.6% |
| 1u7lA02 | 1.20.1460.10 | Mainly Alpha › Up-down Bundle › subunit c (vma5p) of the yeast v-atpase, domain 2 › subunit c (vma5p) of the yeast v-atpase, domain 2 | 0.68 | 52.0 | 3.58e-01 | 84.3% | 75.4% |
| 4mqbB00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.66 | 53.0 | 3.60e-01 | 92.2% | 41.9% |
| 8a0rA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.65 | 53.0 | 4.03e-01 | 96.1% | 63.8% |
| 3d8lA00 | 1.10.8.940 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Uncharacterised protein, phage p2 ORF12 | 0.64 | 53.0 | 4.46e-01 | 96.1% | 80.2% |
| 8amzT01 | 1.25.40.990 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.64 | 54.0 | 3.38e-01 | 92.2% | 26.1% |
| 1b5lA00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.64 | 51.0 | 3.68e-01 | 90.2% | 42.1% |
| 3qkxB00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.63 | 49.0 | 3.37e-01 | 84.3% | 60.8% |
| 5vjhB03 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.63 | 55.0 | 3.62e-01 | 100.0% | 97.2% |
| 3ppbA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.61 | 50.0 | 3.42e-01 | 92.2% | 64.4% |
| 2xv9A00 | 1.10.533.30 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Nematode polyprotein allergen ABA-1 | 0.61 | 50.0 | 3.86e-01 | 100.0% | 63.4% |
| 3on2A00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.56 | 48.0 | 3.36e-01 | 100.0% | 86.8% |
| 8ai9B02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.52 | 41.0 | 3.44e-01 | 98.0% | 74.0% |
ECOD (27)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3682306 | 633.23.1.32 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin › CASP_dom | 0.92 | 71.0 | 4.81e-01 | 82.4% | 25.5% |
| 3721656 | 630.1.1.2 ↗ | a+b complex topology › RuBisCo LSMT C-terminal, substrate-binding domain › RuBisCo LSMT C-terminal, substrate-binding domain › RuBisCo LSMT C-terminal, substrate-binding domain › PF29521 | 0.91 | 72.0 | 5.11e-01 | 84.3% | 31.9% |
| 3964804 | 192.29.1.271 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › Sipho_Gp157 | 0.87 | 63.0 | 4.94e-01 | 76.5% | 39.0% |
| 4663108 | 109.3.1.165 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_3, Ank_4, Ank_5 | 0.81 | 61.0 | 3.67e-01 | 82.4% | 12.7% |
| 3727634 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.80 | 71.0 | 6.30e-01 | 96.1% | 92.9% |
| 3725615 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.79 | 70.0 | 5.97e-01 | 98.0% | 83.7% |
| 3888542 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.77 | 65.0 | 4.40e-01 | 100.0% | 60.0% |
| 148414 | 605.4.1.2 ↗ | alpha duplicates or obligate multimers › ROP-like › ROP protein › ROP protein › SCAB_CC | 0.77 | 60.0 | 6.13e-01 | 84.3% | 91.8% |
| 1879027 | 244.1.1.6 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › Amino_oxidase | 0.76 | 58.0 | 3.44e-01 | 84.3% | 11.3% |
| 3593999 | 1128.1.1.0 ↗ | alpha bundles › LYR protein › LYR protein › LYR protein | 0.75 | 56.0 | 5.00e-01 | 82.4% | 57.3% |
| 3456183 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.75 | 55.0 | 4.41e-01 | 86.3% | 40.0% |
| 3211760 | 3826.1.1.0 ↗ | alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) | 0.75 | 57.0 | 5.06e-01 | 84.3% | 57.3% |
| 3711742 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.72 | 52.0 | 4.11e-01 | 84.3% | 35.7% |
| 3441901 | 632.1.1.13 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain › Rx_N | 0.70 | 54.0 | 4.73e-01 | 86.3% | 67.5% |
| 3581757 | 11.12.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Nicotinic receptor ligand binding domain-like › Nicotinic receptor ligand binding domain-like › Neur_chan_LBD,Neur_chan_memb | 0.70 | 51.0 | 3.44e-01 | 84.3% | 23.6% |
| 3443462 | 632.1.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain | 0.69 | 54.0 | 4.17e-01 | 86.3% | 74.8% |
| 3174635 | 4207.1.1.102 ↗ | alpha duplicates or obligate multimers › Mediator hinge subcomplex-like › Mediator hinge subcomplex-like › RNA polymerase II holoenzyme component SRB7 (MED21) › PF29925 | 0.69 | 53.0 | 4.42e-01 | 86.3% | 47.8% |
| 4928066 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.67 | 51.0 | 3.53e-01 | 84.3% | 24.2% |
| 3598098 | 3652.1.1.0 ↗ | alpha duplicates or obligate multimers › Qua1 › Qua1 › Qua1 | 0.67 | 50.0 | 5.10e-01 | 82.4% | 92.0% |
| 4445312 | 3812.1.1.0 ↗ | alpha bundles › Type III secretion protein YscE › Type III secretion protein YscE › Type III secretion protein YscE | 0.65 | 48.0 | 4.92e-01 | 84.3% | 86.0% |
| 3640538 | 4120.1.1.0 ↗ | few secondary structure elements › Tim10/DDP › Tim10/DDP › Tim10/DDP | 0.64 | 50.0 | 4.50e-01 | 84.3% | 64.3% |
| 4189329 | 6026.1.1.36 ↗ | alpha duplicates or obligate multimers › cwf21 domain › cwf21 domain › cwf21 domain › AlaE | 0.64 | 53.0 | 3.97e-01 | 92.2% | 49.2% |
| 4061943 | 2005.1.1.2 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1b | 0.64 | 49.0 | 2.94e-01 | 80.4% | 20.9% |
| 3511429 | 109.58.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › DNA repair protein Rev1 C-terminal domain › DNA repair protein Rev1 C-terminal domain | 0.62 | 46.0 | 4.01e-01 | 84.3% | 51.8% |
| 3645010 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.60 | 47.0 | 3.75e-01 | 90.2% | 68.7% |
| 3450261 | 109.4.1.1156 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › E_motif | 0.59 | 50.0 | 3.69e-01 | 96.1% | 62.9% |
| 3457424 | 109.4.1.1330 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_1, PPR_2, PPR_3, PPR_long | 0.58 | 47.0 | 3.47e-01 | 96.1% | 59.7% |