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OK040794.1UDL16619.1SEA_ATUIN_24__00024

Bact-Vir

OK040794.1__UDL16619.1__SEA_ATUIN_24__00024

Identity

Accession:: OK040794 ↗
Kingdom:: phage

Quality

86.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Arthrobacter_phage_Atuin

TaxID: 2885972

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-77

PDB

Domain cluster: representative

CATH (12)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2kvtA00	3.30.730.30	Alpha Beta › 2-Layer Sandwich › GCC-box Binding Domain › YaiA protein	0.69	47.0	4.86e-01	78.7%	74.6%
1wxrA03	3.30.160.280	Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain ›	0.61	44.0	4.39e-01	76.0%	77.6%
2dn6A00	2.30.29.30	Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)	0.57	50.0	4.41e-01	100.0%	89.6%
1e5tA02	2.130.10.120	Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain	0.55	35.0	2.32e-01	80.0%	13.6%
4efzB00	3.60.15.10	Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like	0.54	38.0	2.59e-01	73.3%	54.3%
1lwdA00	3.40.718.10	Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase	0.53	37.0	2.35e-01	73.3%	92.7%
1yr2A02	2.130.10.120	Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain	0.53	36.0	2.37e-01	72.0%	20.8%
1e8oA00	3.30.720.10	Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1	0.52	38.0	3.86e-01	85.3%	82.4%
3a8pB01	2.30.29.30	Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)	0.52	42.0	3.69e-01	90.7%	64.7%
1whnA01	3.30.160.20	Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain ›	0.52	36.0	3.30e-01	82.7%	54.5%
6kd0A01	3.40.50.1820	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain	0.51	35.0	2.37e-01	73.3%	19.5%
4wy5A00	3.40.50.1820	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain	0.50	35.0	2.33e-01	73.3%	30.0%

ECOD (16)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3929173	386.1.1.0 ↗	few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers	0.64	40.0	3.87e-01	76.0%	55.3%
3316780	252.1.1.1 ↗	a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD › MBD	0.60	32.0	3.52e-01	70.7%	61.7%
4500042	2004.1.1.87 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N	0.60	40.0	2.47e-01	86.7%	10.9%
3828973	252.1.1.1 ↗	a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD › MBD	0.57	36.0	3.78e-01	72.0%	72.3%
3782891	7556.1.1.1 ↗	a/b three-layered sandwiches › Fe-only hydrogenase › Fe-only hydrogenase › Fe-only hydrogenase › Fe_hyd_lg_C	0.57	39.0	2.53e-01	70.7%	18.6%
3997797	2003.1.5.73 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_16	0.56	35.0	2.62e-01	94.7%	25.4%
3505546	5104.1.1.1 ↗	a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1	0.52	37.0	3.44e-01	76.0%	78.0%
3994644	5.1.4.0 ↗	beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed	0.52	38.0	2.19e-01	77.3%	48.9%
3425721	252.1.1.2 ↗	a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD › DUF7028	0.52	30.0	3.08e-01	77.3%	54.7%
4238947	304.8.1.65 ↗	a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT, PF27446	0.52	41.0	2.87e-01	88.0%	38.0%
3544618	4292.2.1.0 ↗	a+b two layers › FlaG-like › MAGUK binding stalk (MBS) domain › MAGUK binding stalk (MBS) domain	0.52	36.0	3.47e-01	80.0%	64.7%
2439652	1001.1.1.1 ↗	a+b two layers › Formate dehydrogenase/DMSO reductase, domain 1 › Formate dehydrogenase/DMSO reductase, domain 1 › Formate dehydrogenase/DMSO reductase, domain 1 › Molybdop_Fe4S4	0.51	33.0	3.43e-01	77.3%	71.4%
3339933	3346.1.1.1 ↗	a+b two layers › N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2 › N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2 › N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2 › UfSP2_N	0.51	35.0	2.51e-01	72.0%	87.7%
4537756	330.1.1.25 ↗	a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › PF26980	0.51	36.0	3.51e-01	85.3%	67.1%
3604410	2004.1.1.293 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_15	0.51	35.0	2.68e-01	73.3%	44.4%
4988344	223.1.1.23 ↗	a+b three layers › Profilin-like › sensor domains › sensor domains › GAF_2	0.50	40.0	3.14e-01	89.3%	84.7%

D2 high residues 92-141

PDB

Domain cluster: representative

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2py5A05	4.10.80.20	Few Secondary Structures › Irregular › Rhinovirus 14, subunit 4 › DNA polymerase; domain 5	0.55	33.0	3.53e-01	76.0%	90.0%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4958814	3457.1.1.3 ↗	alpha bundles › GxGD membrane protease › GxGD membrane protease › GxGD membrane protease › Arc_PepC_II	0.51	43.0	2.78e-01	100.0%	38.5%