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OK040794.1__UDL16729.1__SEA_ATUIN_135__00135

Bact-Vir

OK040794.1__UDL16729.1__SEA_ATUIN_135__00135

Identity

Accession:
OK040794 ↗
Kingdom:
phage

Quality

60.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Arthrobacter_phage_Atuin

TaxID: 2885972

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 129-187
PDB
Domain cluster: representative
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4bc3A02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.67 43.0 2.98e-01 71.2% 18.8%
4dpoB00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.64 44.0 3.80e-01 74.6% 62.4%
3e3pA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.63 48.0 4.41e-01 83.1% 96.2%
6gmhH01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 49.0 3.86e-01 100.0% 76.4%
2cz4A00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 41.0 3.56e-01 74.6% 96.0%
2pzhA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.58 49.0 3.88e-01 100.0% 67.2%
3f44A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 49.0 3.37e-01 96.6% 94.8%
3onrJ00 3.30.1660.10 Alpha Beta › 2-Layer Sandwich › Dodecin subunit-like › Flavin-binding protein dodecin 0.56 41.0 3.95e-01 100.0% 67.6%
1n7vA03 2.70.250.10 Mainly Beta › Distorted Sandwich › receptor-binding protein prd1-p2, domain 3 › receptor-binding protein prd1-p2, domain 3 0.56 48.0 3.27e-01 100.0% 52.2%
2w59A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 37.0 3.23e-01 71.2% 52.0%
4pbdA00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 36.0 3.11e-01 71.2% 65.7%
2ec8A03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 32.0 2.69e-01 96.6% 33.7%
2vxaA00 3.30.1660.10 Alpha Beta › 2-Layer Sandwich › Dodecin subunit-like › Flavin-binding protein dodecin 0.53 37.0 3.67e-01 100.0% 69.7%
1s28A00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.51 44.0 3.48e-01 100.0% 58.5%
2rb7A02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 37.0 3.08e-01 100.0% 43.0%
2yxlA04 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.51 43.0 3.00e-01 98.3% 97.6%
2bc4A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 31.0 2.62e-01 96.6% 32.1%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4020166 222.1.1.17 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PKS_DH_N 0.66 57.0 4.28e-01 100.0% 59.3%
4202520 222.1.1.17 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PKS_DH_N 0.64 54.0 4.21e-01 100.0% 57.1%
4429745 222.1.1.17 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PKS_DH_N 0.59 48.0 3.74e-01 98.3% 59.3%
4547088 222.1.1.0 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase 0.59 50.0 4.19e-01 100.0% 71.8%
3894989 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.59 37.0 3.21e-01 96.6% 38.0%
3689409 222.1.1.4 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT 0.59 48.0 3.99e-01 100.0% 70.8%
3729382 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.58 40.0 3.35e-01 74.6% 57.3%
3847237 11.1.1.96 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C1-set 0.58 39.0 3.35e-01 72.9% 54.3%
3812456 323.1.1.0 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases 0.56 45.0 3.31e-01 91.5% 60.0%
3895207 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 37.0 3.16e-01 71.2% 53.6%
3281048 304.4.1.4 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › ABM 0.54 36.0 3.18e-01 71.2% 63.3%
5058558 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 35.0 2.93e-01 98.3% 38.1%
4938469 2003.1.5.12 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › N6_N4_Mtase 0.52 35.0 2.57e-01 71.2% 72.6%
3432106 243.3.1.19 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF3615 0.52 39.0 3.15e-01 100.0% 41.0%
3236944 864.1.1.5 ↗ a+b two layers › DLC › DLC › DLC › DUF684 0.50 41.0 3.77e-01 94.9% 100.0%
3656696 2003.1.5.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.50 41.0 2.61e-01 89.8% 31.5%